Gene annotation
Transcriptome id Sobic.002G037400.1
Synonym Sb02g003230, ATNCED9, NCED9
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
UniProt A0A1W0W278
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF49
NCBI CDD -
KEGG Orthology K09840; 9-cis-epoxycarotenoid dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78390 : nine-cis-epoxycarotenoid dioxygenase 9
RAP-DB (Rice) LOC_Os07g05940.1 : 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045042 , Zm00025a025160 , Zm00025a017252 , Zm00025a021710 , Zm00025a049328 , Zm00025a016156 , Zm00025a007266
Brachypodium KQK13983 , KQJ85750 , KQK00921
Barley HORVU6Hr1G068720.3 , HORVU6Hr1G068720.2 , HORVU6Hr1G068720.1 , HORVU6Hr1G068720.5 , HORVU6Hr1G068720.4 , HORVU5Hr1G092850.2 , HORVU5Hr1G008050.1 , HORVU5Hr1G054970.1 , HORVU5Hr1G044510.1
Wheat TraesCS2B02G268400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
2 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
3 Sobic.001G075101 - -
4 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
5 Sobic.002G331450 - -
6 Sobic.006G026400 - -
7 Sobic.009G076700 expressed protein -
8 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
9 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
10 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
11 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
12 Sobic.002G023900 Homeobox domain containing protein, expressed -
13 Sobic.002G342100 no apical meristem protein, putative, expressed -
14 Sobic.009G128300 CUE domain containing protein, expressed -
15 Sobic.007G073750 - -
16 Sobic.003G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
17 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.002G182800 expressed protein -
19 Sobic.007G153001 - -
20 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -


Gene co-expression network
sample Sobic002G037400 Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic002G037400--Sobic006G203000 Sobic007G169600 Sobic007G169600 Sobic002G037400--Sobic007G169600 Sobic001G075101 Sobic001G075101 Sobic002G037400--Sobic001G075101 Sobic003G083000 Sobic003G083000 Sobic002G037400--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G037400--Sobic002G331450 Sobic006G026400 Sobic006G026400 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic007G143100 Sobic007G143100 Sobic002G037400--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic002G037400--Sobic005G016900 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic007G169600--Sobic007G143200 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic007G153001 Sobic007G153001 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic001G075101--Sobic002G182800 Sobic003G083000--Sobic007G169600 Sobic003G083000--Sobic001G075101 Sobic003G083000--Sobic002G331450 Sobic003G083000--Sobic002G037400 Sobic003G083000--Sobic006G203000 Sobic003G083000--Sobic005G016900 Sobic003G083000--Sobic007G143100 Sobic003G083000--Sobic002G325600 Sobic003G083000--Sobic007G143200 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G331450--Sobic002G325600 Sobic002G331450--Sobic003G083000 Sobic002G331450--Sobic002G110200 Sobic002G331450--Sobic006G203000 Sobic002G331450--Sobic002G037400 Sobic009G128300 Sobic009G128300 Sobic002G331450--Sobic009G128300 Sobic002G331450--Sobic002G182800 Sobic006G026400--Sobic002G037400 Sobic006G026400--Sobic006G203000 Sobic006G194600 Sobic006G194600 Sobic006G026400--Sobic006G194600 Sobic006G026400--Sobic007G169600 Sobic006G026400--Sobic001G075101 Sobic006G026400--Sobic009G076700 Sobic009G076500 Sobic009G076500 Sobic006G026400--Sobic009G076500 Sobic006G026400--Sobic003G083000 Sobic004G244100 Sobic004G244100 Sobic006G026400--Sobic004G244100 Sobic009G076700--Sobic007G143100 Sobic007G073750 Sobic007G073750 Sobic009G076700--Sobic007G073750 Sobic009G076700--Sobic005G016900 Sobic009G076700--Sobic007G143200 Sobic003G397400 Sobic003G397400 Sobic009G076700--Sobic003G397400 Sobic009G076700--Sobic007G169600 Sobic009G076700--Sobic002G037400 Sobic009G076700--Sobic003G083000 Sobic010G253500 Sobic010G253500 Sobic009G076700--Sobic010G253500 Sobic007G143100--Sobic007G143200 Sobic007G143100--Sobic005G016900 Sobic007G143100--Sobic007G073750 Sobic007G143100--Sobic009G076700 Sobic007G143100--Sobic003G397400 Sobic007G143100--Sobic007G169600 Sobic007G143100--Sobic003G083000 Sobic007G143100--Sobic002G037400 Sobic007G143100--Sobic001G075101 Sobic005G016900--Sobic007G143100 Sobic005G016900--Sobic007G073750 Sobic005G016900--Sobic007G143200 Sobic005G016900--Sobic009G076700 Sobic005G016900--Sobic003G397400 Sobic005G016900--Sobic007G169600 Sobic005G016900--Sobic003G083000 Sobic005G016900--Sobic002G037400 Sobic005G016900--Sobic001G075101
Octagon: transcription factors


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