Gene annotation
Transcriptome id Sobic.003G083000.1
Synonym Sb03g006980, ATXYN1, RXF12
Functional annotation glycosyl hydrolase family 10 protein, putative, expressed
UniProt C5XQT1
Pfam PF00331
Panther DB PTHR31490 PTHR31490:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G58370 : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
RAP-DB (Rice) LOC_Os01g04290.1 : glycosyl hydrolase family 10 protein, putative, expressed
MaizeGDB (Corn) Zm00025a023576 , Zm00025a017127
Brachypodium KQK02564 , KQK02565 , KQK13823 , KQK16182 , KQK16181
Barley HORVU4Hr1G063790.28 , HORVU4Hr1G063790.20 , HORVU4Hr1G063790.21 , HORVU4Hr1G063790.22 , HORVU4Hr1G063790.23 , HORVU4Hr1G063790.24 , HORVU4Hr1G063790.25 , HORVU4Hr1G063790.26 , HORVU4Hr1G063790.27 , HORVU4Hr1G070310.20 , HORVU4Hr1G070310.21 , HORVU4Hr1G070310.22 , HORVU3Hr1G007470.5 , HORVU3Hr1G007470.4 , HORVU3Hr1G007470.6 , HORVU3Hr1G007470.1 , HORVU3Hr1G007470.3 , HORVU3Hr1G007470.2 , HORVU4Hr1G063790.19 , HORVU4Hr1G063790.18 , HORVU4Hr1G063790.15 , HORVU4Hr1G063790.14 , HORVU4Hr1G063790.17 , HORVU4Hr1G063790.16 , HORVU4Hr1G063790.11 , HORVU4Hr1G063790.10 , HORVU4Hr1G063790.13 , HORVU4Hr1G063790.12 , HORVU4Hr1G070310.19 , HORVU4Hr1G070310.18 , HORVU4Hr1G070310.11 , HORVU4Hr1G070310.13 , HORVU4Hr1G070310.12 , HORVU4Hr1G070310.15 , HORVU4Hr1G070310.14 , HORVU4Hr1G003220.3 , HORVU4Hr1G003220.2 , HORVU4Hr1G003220.1 , HORVU4Hr1G003220.5 , HORVU4Hr1G003220.4 , HORVU4Hr1G063790.9 , HORVU4Hr1G063790.8 , HORVU4Hr1G063790.1 , HORVU4Hr1G063790.3 , HORVU4Hr1G063790.2 , HORVU4Hr1G063790.5 , HORVU4Hr1G063790.4 , HORVU4Hr1G063790.7 , HORVU4Hr1G063790.6
Wheat TraesCS4A02G071100 , TraesCS4B02G259100 , TraesCS4A02G071100 , TraesCS3D02G041600 , TraesCS4B02G021800 , TraesCS3D02G041600 , TraesCS4D02G259500 , TraesCS3D02G041700 , TraesCS3A02G038200 , TraesCS3A02G038000 , TraesCS3A02G038000 , TraesCS3B02G045700 , TraesCS3B02G045700 , TraesCS4B02G227000 , TraesCS4D02G227700 , TraesCS4D02G019500 , TraesCS4A02G045500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
2 Sobic.001G075101 - -
3 Sobic.002G331450 - -
4 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
5 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
6 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
7 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
8 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
9 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
10 Sobic.003G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
11 Sobic.007G153001 - -
12 Sobic.009G076700 expressed protein -
13 Sobic.007G073750 - -
14 Sobic.002G342100 no apical meristem protein, putative, expressed -
15 Sobic.002G182800 expressed protein -
16 Sobic.002G023900 Homeobox domain containing protein, expressed -
17 Sobic.009G128300 CUE domain containing protein, expressed -
18 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
19 Sobic.001G509400 - -
20 Sobic.010G245900 - -


Gene co-expression network
sample Sobic003G083000 Sobic003G083000 Sobic007G169600 Sobic007G169600 Sobic003G083000--Sobic007G169600 Sobic001G075101 Sobic001G075101 Sobic003G083000--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic003G083000--Sobic002G331450 Sobic002G037400 Sobic002G037400 Sobic003G083000--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic003G083000--Sobic006G203000 Sobic005G016900 Sobic005G016900 Sobic003G083000--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic003G083000--Sobic007G143100 Sobic002G325600 Sobic002G325600 Sobic003G083000--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic003G083000--Sobic007G143200 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G169600--Sobic007G143200 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic007G153001 Sobic007G153001 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic001G075101--Sobic002G182800 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G331450--Sobic002G325600 Sobic002G331450--Sobic003G083000 Sobic002G110200 Sobic002G110200 Sobic002G331450--Sobic002G110200 Sobic002G331450--Sobic006G203000 Sobic002G331450--Sobic002G037400 Sobic009G128300 Sobic009G128300 Sobic002G331450--Sobic009G128300 Sobic002G331450--Sobic002G182800 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic006G026400 Sobic006G026400 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic002G037400--Sobic007G143100 Sobic002G037400--Sobic005G016900 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic006G203000--Sobic002G110200 Sobic005G016900--Sobic007G143100 Sobic007G073750 Sobic007G073750 Sobic005G016900--Sobic007G073750 Sobic005G016900--Sobic007G143200 Sobic005G016900--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic005G016900--Sobic003G397400 Sobic005G016900--Sobic007G169600 Sobic005G016900--Sobic003G083000 Sobic005G016900--Sobic002G037400 Sobic005G016900--Sobic001G075101 Sobic007G143100--Sobic007G143200 Sobic007G143100--Sobic005G016900 Sobic007G143100--Sobic007G073750 Sobic007G143100--Sobic009G076700 Sobic007G143100--Sobic003G397400 Sobic007G143100--Sobic007G169600 Sobic007G143100--Sobic003G083000 Sobic007G143100--Sobic002G037400 Sobic007G143100--Sobic001G075101 Sobic002G325600--Sobic007G169600 Sobic002G325600--Sobic002G331450 Sobic002G325600--Sobic001G075101 Sobic002G325600--Sobic003G083000 Sobic002G325600--Sobic006G203000 Sobic002G325600--Sobic002G037400 Sobic002G325600--Sobic001G509400 Sobic002G325600--Sobic005G016900 Sobic002G325600--Sobic007G143100 Sobic007G143200--Sobic007G143100 Sobic007G143200--Sobic005G016900 Sobic007G143200--Sobic007G073750 Sobic007G143200--Sobic009G076700 Sobic007G143200--Sobic003G397400 Sobic007G143200--Sobic007G169600 Sobic007G143200--Sobic003G083000 Sobic007G143200--Sobic002G037400 Sobic007G143200--Sobic001G075101
Octagon: transcription factors


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