Gene annotation
| Transcriptome id | Sobic.006G203000.1 |
|---|---|
| Synonym | ATAOX1A, Sb06g027430, AOX1A |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) immutans protein, putative, expressed |
| UniProt | C5YF57 |
| Pfam | PF01786 |
| Panther DB | PTHR31803 PTHR31803:SF8 |
| NCBI CDD | - |
| KEGG Orthology | K17893; AOX1, ubiquinol oxidase |
| Gene Ontology | GO:0009916; alternative oxidase activity |
Orthologs (automatic annotation)
| TAIR | AT3G22370 : alternative oxidase 1A |
|---|---|
| RAP-DB (Rice) | LOC_Os04g51160.1 : transposon protein, putative, unclassified, expressed |
| MaizeGDB (Corn) | Zm00025a009949 , Zm00025a009948 , Zm00025a009947 , Zm00025a021669 |
| Brachypodium | PNT69270 , KQJ84390 , KQJ84391 , KQJ84389 , KQK00893 |
| Barley | HORVU6Hr1G068150.4 , HORVU6Hr1G068150.5 , HORVU6Hr1G068150.6 , HORVU0Hr1G005420.4 , HORVU0Hr1G005420.3 , HORVU6Hr1G068150.2 , HORVU6Hr1G068150.3 , HORVU2Hr1G101920.2 , HORVU2Hr1G101920.1 , HORVU2Hr1G101990.2 , HORVU2Hr1G101990.1 , HORVU6Hr1G068150.1 |
| Wheat | TraesCS6D02G245800 , TraesCS2B02G459300 , TraesCS2D02G436700 , TraesCS6A02G269100 , TraesCS2A02G439400 , TraesCS6B02G296400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G037400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed | K09840: 9-cis-epoxycarotenoid dioxygenase |
| 2 | Sobic.001G075101 | - | - |
| 3 | Sobic.007G169600 | L1P family of ribosomal proteins domain containing protein, expressed | K02865: RP-L10Ae, large subunit ribosomal protein L10Ae |
| 4 | Sobic.002G331450 | - | - |
| 5 | Sobic.003G083000 | glycosyl hydrolase family 10 protein, putative, expressed | - |
| 6 | Sobic.002G325600 | ankyrin repeat family protein, putative, expressed | - |
| 7 | Sobic.006G026400 | - | - |
| 8 | Sobic.002G023900 | Homeobox domain containing protein, expressed | - |
| 9 | Sobic.002G110200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 10 | Sobic.004G244300 | formin-like protein 3 precursor, putative, expressed | - |
| 11 | Sobic.007G143100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 12 | Sobic.005G016900 | CRP11 - Cysteine-rich family protein precursor, expressed | - |
| 13 | Sobic.002G182800 | expressed protein | - |
| 14 | Sobic.009G128300 | CUE domain containing protein, expressed | - |
| 15 | Sobic.004G281200 | chitin-inducible gibberellin-responsive protein 2, putative, expressed | - |
| 16 | Sobic.010G016500 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed | - |
| 17 | Sobic.009G076700 | expressed protein | - |
| 18 | Sobic.006G194600 | FERONIA receptor-like kinase, putative, expressed | - |
| 19 | Sobic.007G143200 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 20 | Sobic.001G509400 | - | - |
Gene co-expression network
Octagon: transcription factors
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