Gene annotation
Transcriptome id Sobic.010G016500.1
Synonym ATCBF3, CBF3, (SbDREB1);CBF5;CBF5;ethylene response factor 100, DREB1A, dehydration response element binding (DREB) transcription factor, SbERF100;C-repeat Binding Factor, SbCBF5, Sb10g001620
Functional annotation "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. " (PubMedID : 24086146)
Relatively high abundance in cold tolerant sorghum under cold stress (PubMedID : 26645959)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
key regulator in cold signaling pathway (Arabidopsis) (PubMedID : 16244905)
dehydration-responsive element-binding protein, putative, expressed
UniProt Q3T5N1
Pfam PF00847
Panther DB PTHR31839:SF6 PTHR31839
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003700; DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G25470 : C-repeat/DRE binding factor 2
RAP-DB (Rice) LOC_Os06g03670.1 : dehydration-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a041340 , Zm00025a051074 , Zm00025a020881
Brachypodium KQK03191 , KQK00606 , KQJ83929 , KQK19645 , KQJ91109 , KQJ94139 , KQJ97798
Barley HORVU0Hr1G018240.1 , HORVU6Hr1G062940.1 , HORVU5Hr1G080300.2 , HORVU7Hr1G010430.1 , HORVU2Hr1G097850.6 , HORVU2Hr1G097850.5 , HORVU2Hr1G097850.4 , HORVU2Hr1G097850.3 , HORVU2Hr1G097850.1 , HORVU7Hr1G010510.2 , HORVU7Hr1G010510.3 , HORVU7Hr1G010510.4 , HORVU7Hr1G010510.5 , HORVU0Hr1G030500.1 , HORVU5Hr1G080380.1 , HORVU0Hr1G018280.1 , HORVU5Hr1G080300.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G016500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
2 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
3 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
4 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
5 Sobic.004G283300 AP2 domain containing protein, expressed -
6 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
7 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
8 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
9 Sobic.002G182800 expressed protein -
10 Sobic.001G075101 - -
11 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
12 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
13 Sobic.006G078300 - -
14 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
15 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.004G283201 - -
17 Sobic.009G128300 CUE domain containing protein, expressed -
18 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
19 Sobic.006G026400 - -
20 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae


Gene co-expression network
sample Sobic010G016500 Sobic010G016500 Sobic004G281200 Sobic004G281200 Sobic010G016500--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic010G016500--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic010G016500--Sobic006G194600 Sobic006G203000 Sobic006G203000 Sobic010G016500--Sobic006G203000 Sobic004G283300 Sobic004G283300 Sobic010G016500--Sobic004G283300 Sobic002G217100 Sobic002G217100 Sobic010G016500--Sobic002G217100 Sobic004G244100 Sobic004G244100 Sobic010G016500--Sobic004G244100 Sobic001G081600 Sobic001G081600 Sobic010G016500--Sobic001G081600 Sobic002G182800 Sobic002G182800 Sobic010G016500--Sobic002G182800 Sobic004G281200--Sobic010G016500 Sobic004G281200--Sobic004G244300 Sobic008G059000 Sobic008G059000 Sobic004G281200--Sobic008G059000 Sobic004G281200--Sobic006G194600 Sobic004G281200--Sobic006G203000 Sobic004G281200--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic004G281200--Sobic006G210300 Sobic004G281200--Sobic001G081600 Sobic004G281200--Sobic004G244100 Sobic004G244300--Sobic004G281200 Sobic004G244300--Sobic006G194600 Sobic004G244300--Sobic010G016500 Sobic004G244300--Sobic006G203000 Sobic004G244300--Sobic004G244100 Sobic009G167000 Sobic009G167000 Sobic004G244300--Sobic009G167000 Sobic004G244300--Sobic002G217100 Sobic002G037400 Sobic002G037400 Sobic004G244300--Sobic002G037400 Sobic001G075101 Sobic001G075101 Sobic004G244300--Sobic001G075101 Sobic006G194600--Sobic004G244300 Sobic006G026400 Sobic006G026400 Sobic006G194600--Sobic006G026400 Sobic006G194600--Sobic004G244100 Sobic006G194600--Sobic010G016500 Sobic006G194600--Sobic004G281200 Sobic006G194600--Sobic006G203000 Sobic006G194600--Sobic009G167000 Sobic006G194600--Sobic002G037400 Sobic006G194600--Sobic008G059000 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic006G203000--Sobic007G169600 Sobic002G331450 Sobic002G331450 Sobic006G203000--Sobic002G331450 Sobic003G083000 Sobic003G083000 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic002G344700 Sobic002G344700 Sobic004G283300--Sobic002G344700 Sobic004G283300--Sobic010G016500 Sobic004G283300--Sobic001G081600 Sobic004G283201 Sobic004G283201 Sobic004G283300--Sobic004G283201 Sobic009G170100 Sobic009G170100 Sobic004G283300--Sobic009G170100 Sobic006G032200 Sobic006G032200 Sobic004G283300--Sobic006G032200 Sobic004G283300--Sobic004G281200 Sobic001G476400 Sobic001G476400 Sobic004G283300--Sobic001G476400 Sobic004G283300--Sobic006G210300 Sobic002G217100--Sobic006G210300 Sobic002G217100--Sobic001G081600 Sobic001G462800 Sobic001G462800 Sobic002G217100--Sobic001G462800 Sobic002G217100--Sobic004G281200 Sobic002G197600 Sobic002G197600 Sobic002G217100--Sobic002G197600 Sobic002G217100--Sobic010G016500 Sobic002G217100--Sobic004G244300 Sobic002G217100--Sobic009G167000 Sobic002G217100--Sobic004G244100 Sobic003G268900 Sobic003G268900 Sobic004G244100--Sobic003G268900 Sobic004G244100--Sobic006G194600 Sobic004G244100--Sobic004G244300 Sobic004G244100--Sobic004G281200 Sobic004G244100--Sobic009G167000 Sobic004G244100--Sobic010G016500 Sobic004G244100--Sobic002G217100 Sobic004G244100--Sobic006G203000 Sobic004G244100--Sobic006G026400 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic004G025000 Sobic004G025000 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic009G128300 Sobic009G128300 Sobic002G182800--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic002G182800--Sobic001G509400 Sobic003G233900 Sobic003G233900 Sobic002G182800--Sobic003G233900 Sobic002G182800--Sobic001G075101 Sobic002G182800--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G182800--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic002G182800--Sobic003G040800 Sobic010G085400 Sobic010G085400 Sobic002G182800--Sobic010G085400 Sobic002G342100 Sobic002G342100 Sobic002G182800--Sobic002G342100
Octagon: transcription factors


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