Gene annotation
Transcriptome id Sobic.006G032200.1,Sobic.006G032200.2
Synonym Sb06g003280
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt C5YD95
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF155
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66110 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os04g17100.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006806 , Zm00025a046700 , Zm00025a017722 , Zm00025a011977
Brachypodium KQK01380 , KQJ96875 , KQK11982 , KQK23609 , PNT78181 , KQJ81970
Barley HORVU5Hr1G057730.1 , HORVU5Hr1G125030.5 , HORVU6Hr1G091170.2 , HORVU6Hr1G091170.3 , HORVU6Hr1G091170.1 , HORVU6Hr1G091170.6 , HORVU6Hr1G091170.4 , HORVU6Hr1G091170.5 , HORVU5Hr1G124450.1 , HORVU5Hr1G124450.3 , HORVU5Hr1G124450.2 , HORVU5Hr1G069380.1 , HORVU5Hr1G069380.3 , HORVU5Hr1G069380.2 , HORVU5Hr1G069380.4 , HORVU2Hr1G011060.1 , HORVU2Hr1G011060.2 , HORVU1Hr1G036920.1 , HORVU1Hr1G036920.2 , HORVU5Hr1G125030.4 , HORVU5Hr1G125030.6 , HORVU5Hr1G125030.1 , HORVU5Hr1G125030.2 , HORVU5Hr1G125030.3
Wheat TraesCS1B02G157000 , TraesCS6A02G393700 , TraesCS1A02G139900 , TraesCS1A02G139900 , TraesCS4A02G316200 , TraesCS2B02G077100 , TraesCS1D02G139400 , TraesCS5B02G571000 , TraesCS5B02G571000 , TraesCS5B02G571000 , TraesCS5D02G566500 , TraesCS2D02G063000 , TraesCS2A02G064900 , TraesCS5B02G563300 , TraesCS5D02G562000 , TraesCS5B02G191700 , TraesCS5B02G571000 , TraesCS5D02G562000 , TraesCS5A02G191400
Populus -


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cDNA sequences
Sobic.006G032200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
2 Sobic.004G283300 AP2 domain containing protein, expressed -
3 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
4 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
5 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
6 Sobic.002G344700 remorin, putative, expressed -
7 Sobic.009G128300 CUE domain containing protein, expressed -
8 Sobic.001G075101 - -
9 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
10 Sobic.002G182800 expressed protein -
11 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
12 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
13 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
15 Sobic.002G023900 Homeobox domain containing protein, expressed -
16 Sobic.003G087100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
18 Sobic.002G021300 bZIP transcription factor domain containing protein, expressed -
19 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
20 Sobic.003G233900 - -


Gene co-expression network
sample Sobic006G032200 Sobic006G032200 Sobic009G170100 Sobic009G170100 Sobic006G032200--Sobic009G170100 Sobic004G283300 Sobic004G283300 Sobic006G032200--Sobic004G283300 Sobic002G037400 Sobic002G037400 Sobic006G032200--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic006G032200--Sobic006G203000 Sobic004G281200 Sobic004G281200 Sobic006G032200--Sobic004G281200 Sobic002G344700 Sobic002G344700 Sobic006G032200--Sobic002G344700 Sobic009G128300 Sobic009G128300 Sobic006G032200--Sobic009G128300 Sobic001G075101 Sobic001G075101 Sobic006G032200--Sobic001G075101 Sobic010G016500 Sobic010G016500 Sobic006G032200--Sobic010G016500 Sobic009G170100--Sobic006G032200 Sobic009G170100--Sobic004G283300 Sobic001G050800 Sobic001G050800 Sobic009G170100--Sobic001G050800 Sobic009G170100--Sobic004G281200 Sobic001G081600 Sobic001G081600 Sobic009G170100--Sobic001G081600 Sobic001G063600 Sobic001G063600 Sobic009G170100--Sobic001G063600 Sobic003G342600 Sobic003G342600 Sobic009G170100--Sobic003G342600 Sobic009G170100--Sobic002G344700 Sobic009G170100--Sobic010G016500 Sobic004G283300--Sobic002G344700 Sobic004G283300--Sobic010G016500 Sobic004G283300--Sobic001G081600 Sobic004G283201 Sobic004G283201 Sobic004G283300--Sobic004G283201 Sobic004G283300--Sobic009G170100 Sobic004G283300--Sobic006G032200 Sobic004G283300--Sobic004G281200 Sobic001G476400 Sobic001G476400 Sobic004G283300--Sobic001G476400 Sobic006G210300 Sobic006G210300 Sobic004G283300--Sobic006G210300 Sobic002G037400--Sobic006G203000 Sobic007G169600 Sobic007G169600 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic003G083000 Sobic003G083000 Sobic002G037400--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G037400--Sobic002G331450 Sobic006G026400 Sobic006G026400 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic007G143100 Sobic007G143100 Sobic002G037400--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic002G037400--Sobic005G016900 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic004G281200--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic004G281200--Sobic004G244300 Sobic008G059000 Sobic008G059000 Sobic004G281200--Sobic008G059000 Sobic006G194600 Sobic006G194600 Sobic004G281200--Sobic006G194600 Sobic004G281200--Sobic006G203000 Sobic002G217100 Sobic002G217100 Sobic004G281200--Sobic002G217100 Sobic004G281200--Sobic006G210300 Sobic004G281200--Sobic001G081600 Sobic004G244100 Sobic004G244100 Sobic004G281200--Sobic004G244100 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic001G462800 Sobic001G462800 Sobic002G344700--Sobic001G462800 Sobic002G344700--Sobic006G032200 Sobic004G025000 Sobic004G025000 Sobic002G344700--Sobic004G025000 Sobic002G344700--Sobic009G170100 Sobic002G344700--Sobic004G281200 Sobic002G344700--Sobic006G210300 Sobic002G344700--Sobic002G217100 Sobic002G182800 Sobic002G182800 Sobic009G128300--Sobic002G182800 Sobic003G233900 Sobic003G233900 Sobic009G128300--Sobic003G233900 Sobic003G227600 Sobic003G227600 Sobic009G128300--Sobic003G227600 Sobic001G509400 Sobic001G509400 Sobic009G128300--Sobic001G509400 Sobic002G342100 Sobic002G342100 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic007G153001 Sobic007G153001 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G075101--Sobic001G509400 Sobic001G075101--Sobic002G182800 Sobic010G016500--Sobic004G281200 Sobic010G016500--Sobic004G244300 Sobic010G016500--Sobic006G194600 Sobic010G016500--Sobic006G203000 Sobic010G016500--Sobic004G283300 Sobic010G016500--Sobic002G217100 Sobic010G016500--Sobic004G244100 Sobic010G016500--Sobic001G081600 Sobic010G016500--Sobic002G182800
Octagon: transcription factors


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