Gene annotation
Transcriptome id Sobic.006G078350.1
Synonym -
Functional annotation -
UniProt A0A1Z5RCS9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G075101 - -
2 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
3 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
4 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
5 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.002G023900 Homeobox domain containing protein, expressed -
7 Sobic.007G153001 - -
8 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
9 Sobic.006G078300 - -
10 Sobic.002G331450 - -
11 Sobic.002G182800 expressed protein -
12 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
13 Sobic.002G342100 no apical meristem protein, putative, expressed -
14 Sobic.001G509400 - -
15 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
16 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
17 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
18 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
19 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
20 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic006G078350 Sobic006G078350 Sobic001G075101 Sobic001G075101 Sobic006G078350--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic006G078350--Sobic007G169600 Sobic006G203000 Sobic006G203000 Sobic006G078350--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic006G078350--Sobic002G037400 Sobic003G083000 Sobic003G083000 Sobic006G078350--Sobic003G083000 Sobic002G023900 Sobic002G023900 Sobic006G078350--Sobic002G023900 Sobic007G153001 Sobic007G153001 Sobic006G078350--Sobic007G153001 Sobic007G143100 Sobic007G143100 Sobic006G078350--Sobic007G143100 Sobic006G078300 Sobic006G078300 Sobic006G078350--Sobic006G078300 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic001G075101--Sobic002G331450 Sobic001G075101--Sobic007G153001 Sobic002G325600 Sobic002G325600 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic001G075101--Sobic002G182800 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic005G016900 Sobic005G016900 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic007G169600--Sobic007G143200 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G026400 Sobic006G026400 Sobic006G203000--Sobic006G026400 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic002G037400--Sobic007G143100 Sobic002G037400--Sobic005G016900 Sobic003G083000--Sobic007G169600 Sobic003G083000--Sobic001G075101 Sobic003G083000--Sobic002G331450 Sobic003G083000--Sobic002G037400 Sobic003G083000--Sobic006G203000 Sobic003G083000--Sobic005G016900 Sobic003G083000--Sobic007G143100 Sobic003G083000--Sobic002G325600 Sobic003G083000--Sobic007G143200 Sobic002G023900--Sobic001G075101 Sobic002G023900--Sobic006G203000 Sobic002G023900--Sobic007G153001 Sobic002G023900--Sobic002G037400 Sobic002G023900--Sobic007G169600 Sobic002G023900--Sobic003G083000 Sobic002G023900--Sobic002G331450 Sobic003G040800 Sobic003G040800 Sobic002G023900--Sobic003G040800 Sobic001G106000 Sobic001G106000 Sobic002G023900--Sobic001G106000 Sobic007G153001--Sobic001G075101 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic007G153001--Sobic002G023900 Sobic002G342100 Sobic002G342100 Sobic007G153001--Sobic002G342100 Sobic007G153001--Sobic002G331450 Sobic007G153001--Sobic002G037400 Sobic007G153001--Sobic006G203000 Sobic007G153001--Sobic002G325600 Sobic007G143100--Sobic007G143200 Sobic007G143100--Sobic005G016900 Sobic007G073750 Sobic007G073750 Sobic007G143100--Sobic007G073750 Sobic007G143100--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic007G143100--Sobic003G397400 Sobic007G143100--Sobic007G169600 Sobic007G143100--Sobic003G083000 Sobic007G143100--Sobic002G037400 Sobic007G143100--Sobic001G075101 Sobic010G016500 Sobic010G016500 Sobic006G078300--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic006G078300--Sobic004G244300 Sobic006G078300--Sobic006G203000 Sobic006G078300--Sobic001G075101 Sobic004G281200 Sobic004G281200 Sobic006G078300--Sobic004G281200 Sobic006G194600 Sobic006G194600 Sobic006G078300--Sobic006G194600 Sobic006G078300--Sobic001G509400 Sobic006G078300--Sobic006G078350 Sobic001G157400 Sobic001G157400 Sobic006G078300--Sobic001G157400
Octagon: transcription factors


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