Gene annotation
Transcriptome id Sobic.001G106000.2
Synonym BP, KNAT1, BP1, Sb01g009460
Functional annotation homeobox protein knotted-1, putative, expressed
UniProt A0A1Z5S565
Pfam PF03789 PF05920 PF03790 PF03791
Panther DB PTHR11850 PTHR11850:SF87
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G08150 : KNOTTED-like from Arabidopsis thaliana
RAP-DB (Rice) LOC_Os03g51710.2 : homeobox protein knotted-1, putative, expressed
MaizeGDB (Corn) Zm00025a007979 , Zm00025a008357 , Zm00025a024290 , Zm00025a038168 , Zm00025a044961 , Zm00025a007981 , Zm00025a000323 , Zm00025a007492 , Zm00025a040695 , Zm00025a016198
Brachypodium KQK04078 , KQK13818 , KQK13819 , KQK20926 , PNT74062 , PNT74065 , PNT74064 , PNT74063 , KQK07913 , KQK13423 , KQK13422
Barley HORVU1Hr1G015720.2 , HORVU1Hr1G015720.3 , HORVU1Hr1G015720.4 , HORVU1Hr1G015720.5 , HORVU1Hr1G015720.6 , HORVU1Hr1G015720.7 , HORVU1Hr1G015720.8 , HORVU1Hr1G015720.9 , HORVU4Hr1G009730.5 , HORVU7Hr1G114650.6 , HORVU7Hr1G114650.4 , HORVU7Hr1G114650.5 , HORVU7Hr1G114650.2 , HORVU7Hr1G114650.3 , HORVU7Hr1G114650.1 , HORVU4Hr1G003410.1 , HORVU4Hr1G003410.2 , HORVU4Hr1G003410.3 , HORVU4Hr1G003410.4 , HORVU4Hr1G003410.5 , HORVU4Hr1G003410.6 , HORVU4Hr1G003410.7 , HORVU4Hr1G003410.8 , HORVU5Hr1G098570.2 , HORVU5Hr1G098570.3 , HORVU5Hr1G098570.1 , HORVU5Hr1G098570.6 , HORVU5Hr1G098570.7 , HORVU5Hr1G098570.4 , HORVU5Hr1G098570.5 , HORVU5Hr1G098570.8 , HORVU5Hr1G098570.9 , HORVU4Hr1G009730.13 , HORVU4Hr1G009730.12 , HORVU4Hr1G009730.11 , HORVU4Hr1G009730.10 , HORVU5Hr1G098570.10 , HORVU5Hr1G098570.11 , HORVU1Hr1G015720.1 , HORVU4Hr1G009730.9 , HORVU1Hr1G015720.12 , HORVU1Hr1G015720.10 , HORVU1Hr1G015720.11 , HORVU4Hr1G009730.3 , HORVU4Hr1G009730.2 , HORVU4Hr1G009730.1 , HORVU4Hr1G003360.4 , HORVU4Hr1G003360.2 , HORVU4Hr1G003360.3 , HORVU4Hr1G003360.1
Wheat TraesCS1A02G072800 , TraesCS5A02G405900 , TraesCS4A02G292200 , TraesCS4B02G057900 , TraesCS7D02G501000 , TraesCS7D02G501000 , TraesCS4D02G019800 , TraesCS5B02G410600 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS1B02G135600 , TraesCS1B02G135600 , TraesCS1D02G075700 , TraesCS4A02G291900 , TraesCS4D02G058000 , TraesCS4A02G292200 , TraesCS4D02G019600 , TraesCS4D02G019600 , TraesCS1B02G091700 , TraesCS4D02G019900 , TraesCS4A02G256700 , TraesCS5B02G454600 , TraesCS5D02G415900 , TraesCS4A02G292100 , TraesCS4B02G021900 , TraesCS4B02G021900 , TraesCS4B02G021900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G040800 WRKY102, expressed -
2 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
3 Sobic.003G233900 - -
4 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
5 Sobic.009G128300 CUE domain containing protein, expressed -
6 Sobic.002G023900 Homeobox domain containing protein, expressed -
7 Sobic.001G430700 expressed protein -
8 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
9 Sobic.007G153001 - -
10 Sobic.001G106200 Homeobox domain containing protein, expressed -
11 Sobic.002G182800 expressed protein -
12 Sobic.002G342100 no apical meristem protein, putative, expressed -
13 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.001G509400 - -
15 Sobic.001G075101 - -
16 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
17 Sobic.002G331450 - -
18 Sobic.004G257350 - -
19 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
20 Sobic.002G267800 expressed protein -


Gene co-expression network
sample Sobic001G106000 Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic001G106000--Sobic003G040800 Sobic003G017200 Sobic003G017200 Sobic001G106000--Sobic003G017200 Sobic003G233900 Sobic003G233900 Sobic001G106000--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic001G106000--Sobic004G285100 Sobic009G128300 Sobic009G128300 Sobic001G106000--Sobic009G128300 Sobic002G023900 Sobic002G023900 Sobic001G106000--Sobic002G023900 Sobic001G430700 Sobic001G430700 Sobic001G106000--Sobic001G430700 Sobic003G227600 Sobic003G227600 Sobic001G106000--Sobic003G227600 Sobic007G153001 Sobic007G153001 Sobic001G106000--Sobic007G153001 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic002G182800 Sobic002G182800 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic009G216900 Sobic009G216900 Sobic003G040800--Sobic009G216900 Sobic003G040800--Sobic004G285100 Sobic003G040800--Sobic003G017200 Sobic001G509400 Sobic001G509400 Sobic003G040800--Sobic001G509400 Sobic003G017200--Sobic001G106000 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic003G017200--Sobic007G153001 Sobic006G200200 Sobic006G200200 Sobic003G017200--Sobic006G200200 Sobic003G017200--Sobic009G128300 Sobic003G144200 Sobic003G144200 Sobic003G017200--Sobic003G144200 Sobic003G083000 Sobic003G083000 Sobic003G017200--Sobic003G083000 Sobic003G017200--Sobic002G182800 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic009G000700 Sobic009G000700 Sobic003G233900--Sobic009G000700 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic004G285100--Sobic003G233900 Sobic004G285100--Sobic003G040800 Sobic004G310600 Sobic004G310600 Sobic004G285100--Sobic004G310600 Sobic004G285100--Sobic009G000700 Sobic004G285100--Sobic001G106000 Sobic005G087800 Sobic005G087800 Sobic004G285100--Sobic005G087800 Sobic004G285100--Sobic009G128300 Sobic004G285100--Sobic003G227600 Sobic004G155150 Sobic004G155150 Sobic004G285100--Sobic004G155150 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic002G331450 Sobic002G331450 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic001G075101 Sobic001G075101 Sobic009G128300--Sobic001G075101 Sobic002G023900--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic002G023900--Sobic006G203000 Sobic002G023900--Sobic007G153001 Sobic002G037400 Sobic002G037400 Sobic002G023900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic002G023900--Sobic007G169600 Sobic002G023900--Sobic003G083000 Sobic002G023900--Sobic002G331450 Sobic002G023900--Sobic003G040800 Sobic002G023900--Sobic001G106000 Sobic001G450800 Sobic001G450800 Sobic001G430700--Sobic001G450800 Sobic003G361300 Sobic003G361300 Sobic001G430700--Sobic003G361300 Sobic001G430700--Sobic001G106000 Sobic001G430700--Sobic003G040800 Sobic001G430700--Sobic004G285100 Sobic001G430700--Sobic003G233900 Sobic002G267800 Sobic002G267800 Sobic001G430700--Sobic002G267800 Sobic003G141800 Sobic003G141800 Sobic001G430700--Sobic003G141800 Sobic001G430700--Sobic009G000700 Sobic003G227600--Sobic009G128300 Sobic003G227600--Sobic009G216900 Sobic003G227600--Sobic003G233900 Sobic003G227600--Sobic002G182800 Sobic003G227600--Sobic003G040800 Sobic003G227600--Sobic002G342100 Sobic003G227600--Sobic001G509400 Sobic003G227600--Sobic001G075101 Sobic003G227600--Sobic002G331450 Sobic007G153001--Sobic001G075101 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic007G153001--Sobic002G023900 Sobic007G153001--Sobic002G342100 Sobic007G153001--Sobic002G331450 Sobic007G153001--Sobic002G037400 Sobic007G153001--Sobic006G203000 Sobic002G325600 Sobic002G325600 Sobic007G153001--Sobic002G325600
Octagon: transcription factors


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