Gene annotation
Transcriptome id Sobic.001G155300.1
Synonym ATNCED3, STO1, Sb01g013520, SIS7, NCED3
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
UniProt C5WR66 , V5P1J1 , A0A023ZSJ1
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF39
NCBI CDD -
KEGG Orthology K09840; 9-cis-epoxycarotenoid dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78390 : nine-cis-epoxycarotenoid dioxygenase 9
RAP-DB (Rice) LOC_Os03g44380.1 : 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a017252 , Zm00025a025160 , Zm00025a004722 , Zm00025a007266 , Zm00025a036291
Brachypodium KQK13983
Barley HORVU5Hr1G092850.2 , HORVU5Hr1G008050.1 , HORVU5Hr1G054970.1 , HORVU5Hr1G044510.1
Wheat TraesCS2B02G268400
Populus -


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cDNA sequences
Sobic.001G155300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
2 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
3 Sobic.002G342100 no apical meristem protein, putative, expressed -
4 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
5 Sobic.001G075101 - -
6 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
8 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
9 Sobic.009G076700 expressed protein -
10 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
11 Sobic.002G331450 - -
12 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
13 Sobic.006G078350 - -
14 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
15 Sobic.007G073750 - -
16 Sobic.007G153001 - -
17 Sobic.003G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
18 Sobic.002G182800 expressed protein -
19 Sobic.002G023900 Homeobox domain containing protein, expressed -
20 Sobic.009G128300 CUE domain containing protein, expressed -


Gene co-expression network
sample Sobic001G155300 Sobic001G155300 Sobic007G169600 Sobic007G169600 Sobic001G155300--Sobic007G169600 Sobic002G037400 Sobic002G037400 Sobic001G155300--Sobic002G037400 Sobic002G342100 Sobic002G342100 Sobic001G155300--Sobic002G342100 Sobic007G143100 Sobic007G143100 Sobic001G155300--Sobic007G143100 Sobic001G075101 Sobic001G075101 Sobic001G155300--Sobic001G075101 Sobic003G083000 Sobic003G083000 Sobic001G155300--Sobic003G083000 Sobic006G203000 Sobic006G203000 Sobic001G155300--Sobic006G203000 Sobic005G016900 Sobic005G016900 Sobic001G155300--Sobic005G016900 Sobic009G076700 Sobic009G076700 Sobic001G155300--Sobic009G076700 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic002G325600 Sobic002G325600 Sobic007G169600--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic007G169600--Sobic007G143200 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic006G026400 Sobic006G026400 Sobic002G037400--Sobic006G026400 Sobic002G037400--Sobic009G076700 Sobic002G037400--Sobic007G143100 Sobic002G037400--Sobic005G016900 Sobic009G128300 Sobic009G128300 Sobic002G342100--Sobic009G128300 Sobic002G342100--Sobic001G075101 Sobic002G182800 Sobic002G182800 Sobic002G342100--Sobic002G182800 Sobic003G227600 Sobic003G227600 Sobic002G342100--Sobic003G227600 Sobic002G342100--Sobic002G331450 Sobic002G342100--Sobic007G169600 Sobic002G342100--Sobic003G083000 Sobic007G153001 Sobic007G153001 Sobic002G342100--Sobic007G153001 Sobic002G342100--Sobic002G037400 Sobic007G143100--Sobic007G143200 Sobic007G143100--Sobic005G016900 Sobic007G073750 Sobic007G073750 Sobic007G143100--Sobic007G073750 Sobic007G143100--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic007G143100--Sobic003G397400 Sobic007G143100--Sobic007G169600 Sobic007G143100--Sobic003G083000 Sobic007G143100--Sobic002G037400 Sobic007G143100--Sobic001G075101 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G509400 Sobic001G509400 Sobic001G075101--Sobic001G509400 Sobic001G075101--Sobic002G182800 Sobic003G083000--Sobic007G169600 Sobic003G083000--Sobic001G075101 Sobic003G083000--Sobic002G331450 Sobic003G083000--Sobic002G037400 Sobic003G083000--Sobic006G203000 Sobic003G083000--Sobic005G016900 Sobic003G083000--Sobic007G143100 Sobic003G083000--Sobic002G325600 Sobic003G083000--Sobic007G143200 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic005G016900--Sobic007G143100 Sobic005G016900--Sobic007G073750 Sobic005G016900--Sobic007G143200 Sobic005G016900--Sobic009G076700 Sobic005G016900--Sobic003G397400 Sobic005G016900--Sobic007G169600 Sobic005G016900--Sobic003G083000 Sobic005G016900--Sobic002G037400 Sobic005G016900--Sobic001G075101 Sobic009G076700--Sobic007G143100 Sobic009G076700--Sobic007G073750 Sobic009G076700--Sobic005G016900 Sobic009G076700--Sobic007G143200 Sobic009G076700--Sobic003G397400 Sobic009G076700--Sobic007G169600 Sobic009G076700--Sobic002G037400 Sobic009G076700--Sobic003G083000 Sobic010G253500 Sobic010G253500 Sobic009G076700--Sobic010G253500
Octagon: transcription factors


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