Gene annotation
Transcriptome id Sobic.003G361300.1
Synonym Sb03g040320, MAP1, WAV5, AUX1, PIR1, SbLAX3, influx carriers auxin resistant 1/like aux1
Functional annotation "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
transmembrane amino acid transporter protein, putative, expressed
UniProt C5XQG2
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF256
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology K13946; AUX1, auxin influx carrier (AUX1 LAX family)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38120 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os01g63770.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a043787 , Zm00025a003791 , Zm00025a026807 , Zm00025a033966 , Zm00025a001545
Brachypodium KQK10644 , KQK10645 , KQK22608
Barley HORVU1Hr1G073490.6 , HORVU1Hr1G073490.7 , HORVU1Hr1G073490.4 , HORVU1Hr1G073490.5 , HORVU1Hr1G073490.2 , HORVU1Hr1G073490.1 , HORVU1Hr1G073490.8 , HORVU1Hr1G073490.9 , HORVU4Hr1G019930.1 , HORVU4Hr1G019930.2 , HORVU4Hr1G019930.3 , HORVU4Hr1G019930.4 , HORVU4Hr1G019930.5 , HORVU3Hr1G084750.1 , HORVU3Hr1G084750.3 , HORVU3Hr1G084750.2 , HORVU3Hr1G084750.5 , HORVU3Hr1G084750.4 , HORVU3Hr1G084750.7 , HORVU3Hr1G084750.6 , HORVU1Hr1G016700.3 , HORVU1Hr1G016700.1 , HORVU4Hr1G063650.4 , HORVU4Hr1G063650.5 , HORVU4Hr1G063650.6 , HORVU4Hr1G063650.7 , HORVU4Hr1G063650.1 , HORVU4Hr1G063650.2 , HORVU4Hr1G063650.3 , HORVU4Hr1G063650.8
Wheat TraesCS1D02G277600 , TraesCS3B02G401000 , TraesCS3D02G362100 , TraesCS4D02G108800 , TraesCS4B02G226500 , TraesCS1B02G095900 , TraesCS4A02G207600 , TraesCS1A02G278400 , TraesCS3A02G369200 , TraesCS1A02G077800 , TraesCS4B02G111100 , TraesCS1D02G079900 , TraesCS4D02G227200 , TraesCS4A02G070500 , TraesCS1B02G287300
Populus -


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cDNA sequences
Sobic.003G361300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
2 Sobic.001G430700 expressed protein -
3 Sobic.003G198150 - -
4 Sobic.008G044750 - -
5 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
6 Sobic.003G040800 WRKY102, expressed -
7 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.003G233900 - -
9 Sobic.009G128300 CUE domain containing protein, expressed -
10 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
11 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
12 Sobic.009G159900 homeodomain protein, putative, expressed -
13 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
14 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
15 Sobic.001G509400 - -
16 Sobic.004G257350 - -
17 Sobic.004G245900 - -
18 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
19 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
20 Sobic.002G079801 - -


Gene co-expression network
sample Sobic003G361300 Sobic003G361300 Sobic001G450800 Sobic001G450800 Sobic003G361300--Sobic001G450800 Sobic001G430700 Sobic001G430700 Sobic003G361300--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic003G361300--Sobic003G198150 Sobic008G044750 Sobic008G044750 Sobic003G361300--Sobic008G044750 Sobic003G227600 Sobic003G227600 Sobic003G361300--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic003G361300--Sobic003G040800 Sobic009G216900 Sobic009G216900 Sobic003G361300--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G361300--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic003G361300--Sobic009G128300 Sobic001G450800--Sobic003G361300 Sobic001G450800--Sobic001G430700 Sobic001G450800--Sobic003G198150 Sobic001G106000 Sobic001G106000 Sobic001G450800--Sobic001G106000 Sobic001G450800--Sobic003G040800 Sobic001G450800--Sobic003G227600 Sobic001G450800--Sobic008G044750 Sobic001G450800--Sobic009G216900 Sobic004G285100 Sobic004G285100 Sobic001G450800--Sobic004G285100 Sobic001G430700--Sobic001G450800 Sobic001G430700--Sobic003G361300 Sobic001G430700--Sobic001G106000 Sobic001G430700--Sobic003G040800 Sobic001G430700--Sobic004G285100 Sobic001G430700--Sobic003G233900 Sobic002G267800 Sobic002G267800 Sobic001G430700--Sobic002G267800 Sobic003G141800 Sobic003G141800 Sobic001G430700--Sobic003G141800 Sobic009G000700 Sobic009G000700 Sobic001G430700--Sobic009G000700 Sobic003G198150--Sobic008G044750 Sobic003G198200 Sobic003G198200 Sobic003G198150--Sobic003G198200 Sobic003G198150--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic003G198150--Sobic001G509400 Sobic003G079800 Sobic003G079800 Sobic003G198150--Sobic003G079800 Sobic003G198150--Sobic003G227600 Sobic004G170032 Sobic004G170032 Sobic003G198150--Sobic004G170032 Sobic003G198150--Sobic003G233900 Sobic003G198150--Sobic001G450800 Sobic008G044750--Sobic001G509400 Sobic008G044750--Sobic009G128300 Sobic008G044750--Sobic003G079800 Sobic002G182800 Sobic002G182800 Sobic008G044750--Sobic002G182800 Sobic008G044750--Sobic003G233900 Sobic008G044750--Sobic003G227600 Sobic008G044750--Sobic003G198150 Sobic003G066900 Sobic003G066900 Sobic008G044750--Sobic003G066900 Sobic001G075101 Sobic001G075101 Sobic008G044750--Sobic001G075101 Sobic003G227600--Sobic009G128300 Sobic003G227600--Sobic009G216900 Sobic003G227600--Sobic003G233900 Sobic003G227600--Sobic002G182800 Sobic003G227600--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G227600--Sobic002G342100 Sobic003G227600--Sobic001G509400 Sobic003G227600--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic003G227600--Sobic002G331450 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic003G040800--Sobic009G216900 Sobic003G040800--Sobic004G285100 Sobic003G017200 Sobic003G017200 Sobic003G040800--Sobic003G017200 Sobic003G040800--Sobic001G509400 Sobic009G216900--Sobic003G227600 Sobic009G216900--Sobic003G233900 Sobic009G216900--Sobic009G128300 Sobic009G216900--Sobic003G040800 Sobic009G216900--Sobic002G182800 Sobic009G216900--Sobic002G342100 Sobic009G216900--Sobic001G509400 Sobic009G216900--Sobic004G285100 Sobic009G216900--Sobic003G079800 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic009G128300--Sobic008G044750 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101
Octagon: transcription factors


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