Gene annotation
| Transcriptome id | Sobic.009G159900.1 |
|---|---|
| Synonym | BLH9, PNY, BLR, VAN, Sb09g022270, HB-6, LSN, RPL |
| Functional annotation | homeodomain protein, putative, expressed |
| UniProt | C5YZ69 |
| Pfam | PF05920 PF07526 |
| Panther DB | PTHR11850 PTHR11850:SF91 |
| NCBI CDD | KOG0773; Transcription factor MEIS1 and related HOX domain proteins |
| KEGG Orthology | - |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding |
Orthologs (automatic annotation)
| TAIR | AT5G02030 : POX (plant homeobox) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g38120.1 : homeodomain protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026855 , Zm00025a043881 , Zm00025a037189 |
| Brachypodium | KQK10570 , PNT73195 , KQK05949 , KQK05948 |
| Barley | HORVU1Hr1G072850.5 , HORVU1Hr1G072850.4 , HORVU1Hr1G072850.1 , HORVU1Hr1G072850.3 , HORVU1Hr1G072850.2 , HORVU1Hr1G072850.6 , HORVU3Hr1G085720.7 , HORVU3Hr1G085720.6 , HORVU3Hr1G085720.5 , HORVU3Hr1G085720.3 , HORVU3Hr1G085720.1 , HORVU3Hr1G085720.8 , HORVU1Hr1G072850.7 |
| Wheat | TraesCS1D02G280300 , TraesCS1B02G290200 , TraesCS3D02G357400 , TraesCS3A02G363900 , TraesCS1A02G281100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G032200 | heavy metal-associated domain containing protein, expressed | - |
| 2 | Sobic.003G144200 | Homeobox domain containing protein, expressed | - |
| 3 | Sobic.009G170100 | DUF640 domain containing protein, putative, expressed | - |
| 4 | Sobic.001G075800 | RNA recognition motif containing protein, putative, expressed | K14411: RNA-binding protein Musashi |
| 5 | Sobic.001G157400 | Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed | K09338: homeobox-leucine zipper protein |
| 6 | Sobic.003G342600 | DUF640 domain containing protein, putative, expressed | - |
| 7 | Sobic.003G361300 | "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 8 | Sobic.004G273200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed | K08235: xyloglucan:xyloglucosyl transferase |
| 9 | Sobic.002G023900 | Homeobox domain containing protein, expressed | - |
| 10 | Sobic.003G056500 | staphylococcal nuclease homologue, putative, expressed | - |
| 11 | Sobic.003G036000 | NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 12 | Sobic.009G030200 | homeobox protein knotted-1-like 6, putative, expressed | - |
| 13 | Sobic.001G050800 | galactosyltransferase family protein, putative, expressed | - |
| 14 | Sobic.007G101800 | pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed | - |
| 15 | Sobic.008G044750 | - | - |
| 16 | Sobic.001G075101 | - | - |
| 17 | Sobic.009G128300 | CUE domain containing protein, expressed | - |
| 18 | Sobic.003G198150 | - | - |
| 19 | Sobic.004G281200 | chitin-inducible gibberellin-responsive protein 2, putative, expressed | - |
| 20 | Sobic.006G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
Gene co-expression network
Octagon: transcription factors
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