Gene annotation
Transcriptome id Sobic.003G144200.1
Synonym KNAT6S, Sb03g012480, KNAT6L, KNAT6
Functional annotation Homeobox domain containing protein, expressed
UniProt C5XI60
Pfam PF03789 PF05920 PF03790 PF03791
Panther DB PTHR11850 PTHR11850:SF115
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G23380 : KNOTTED1-like homeobox gene 6
RAP-DB (Rice) LOC_Os01g19694.1 : Homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017126 , Zm00025a040695 , Zm00025a024290 , Zm00025a038168
Brachypodium KQK04078 , KQK07913 , PNT72012
Barley HORVU1Hr1G015720.12 , HORVU1Hr1G015720.10 , HORVU1Hr1G015720.11 , HORVU1Hr1G015720.1 , HORVU1Hr1G015720.2 , HORVU1Hr1G015720.3 , HORVU1Hr1G015720.4 , HORVU1Hr1G015720.5 , HORVU1Hr1G015720.6 , HORVU1Hr1G015720.7 , HORVU1Hr1G015720.8 , HORVU1Hr1G015720.9
Wheat TraesCS1A02G072800 , TraesCS1D02G075600 , TraesCS1D02G075700 , TraesCS1B02G091600 , TraesCS1B02G091700 , TraesCS1A02G072700 , TraesCS6B02G173900 , TraesCS6B02G173900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
2 Sobic.002G023900 Homeobox domain containing protein, expressed -
3 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
4 Sobic.009G159900 homeodomain protein, putative, expressed -
5 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
6 Sobic.001G316900 bZIP family transcription factor, putative, expressed -
7 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
8 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
9 Sobic.007G153001 - -
10 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
11 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
12 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
14 Sobic.006G078300 - -
15 Sobic.001G075101 - -
16 Sobic.003G040800 WRKY102, expressed -
17 Sobic.002G342100 no apical meristem protein, putative, expressed -
18 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
19 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
20 Sobic.006G078350 - -


Gene co-expression network
sample Sobic003G144200 Sobic003G144200 Sobic003G017200 Sobic003G017200 Sobic003G144200--Sobic003G017200 Sobic002G023900 Sobic002G023900 Sobic003G144200--Sobic002G023900 Sobic001G157400 Sobic001G157400 Sobic003G144200--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic003G144200--Sobic009G159900 Sobic001G050800 Sobic001G050800 Sobic003G144200--Sobic001G050800 Sobic001G316900 Sobic001G316900 Sobic003G144200--Sobic001G316900 Sobic001G106000 Sobic001G106000 Sobic003G144200--Sobic001G106000 Sobic009G170100 Sobic009G170100 Sobic003G144200--Sobic009G170100 Sobic007G153001 Sobic007G153001 Sobic003G144200--Sobic007G153001 Sobic003G017200--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic003G017200--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G017200--Sobic002G342100 Sobic003G017200--Sobic007G153001 Sobic006G200200 Sobic006G200200 Sobic003G017200--Sobic006G200200 Sobic009G128300 Sobic009G128300 Sobic003G017200--Sobic009G128300 Sobic003G017200--Sobic003G144200 Sobic003G083000 Sobic003G083000 Sobic003G017200--Sobic003G083000 Sobic002G182800 Sobic002G182800 Sobic003G017200--Sobic002G182800 Sobic001G075101 Sobic001G075101 Sobic002G023900--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic002G023900--Sobic006G203000 Sobic002G023900--Sobic007G153001 Sobic002G037400 Sobic002G037400 Sobic002G023900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic002G023900--Sobic007G169600 Sobic002G023900--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G023900--Sobic002G331450 Sobic002G023900--Sobic003G040800 Sobic002G023900--Sobic001G106000 Sobic001G157400--Sobic001G050800 Sobic001G157400--Sobic002G023900 Sobic006G026400 Sobic006G026400 Sobic001G157400--Sobic006G026400 Sobic002G068800 Sobic002G068800 Sobic001G157400--Sobic002G068800 Sobic003G278700 Sobic003G278700 Sobic001G157400--Sobic003G278700 Sobic003G227600 Sobic003G227600 Sobic001G157400--Sobic003G227600 Sobic006G032200 Sobic006G032200 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic001G157400--Sobic009G170100 Sobic009G159900--Sobic006G032200 Sobic009G159900--Sobic003G144200 Sobic009G159900--Sobic009G170100 Sobic001G075800 Sobic001G075800 Sobic009G159900--Sobic001G075800 Sobic009G159900--Sobic001G157400 Sobic003G342600 Sobic003G342600 Sobic009G159900--Sobic003G342600 Sobic003G361300 Sobic003G361300 Sobic009G159900--Sobic003G361300 Sobic004G273200 Sobic004G273200 Sobic009G159900--Sobic004G273200 Sobic009G159900--Sobic002G023900 Sobic001G050800--Sobic001G157400 Sobic001G050800--Sobic009G170100 Sobic006G194600 Sobic006G194600 Sobic001G050800--Sobic006G194600 Sobic001G050800--Sobic006G026400 Sobic001G050800--Sobic006G032200 Sobic004G281200 Sobic004G281200 Sobic001G050800--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic001G050800--Sobic004G244300 Sobic004G244100 Sobic004G244100 Sobic001G050800--Sobic004G244100 Sobic001G050800--Sobic002G068800 Sobic001G316900--Sobic003G144200 Sobic001G061900 Sobic001G061900 Sobic001G316900--Sobic001G061900 Sobic001G316900--Sobic003G017200 Sobic001G316900--Sobic009G170100 Sobic006G110000 Sobic006G110000 Sobic001G316900--Sobic006G110000 Sobic001G316900--Sobic002G068800 Sobic001G316900--Sobic001G157400 Sobic001G316900--Sobic009G159900 Sobic009G037800 Sobic009G037800 Sobic001G316900--Sobic009G037800 Sobic001G106000--Sobic003G040800 Sobic001G106000--Sobic003G017200 Sobic003G233900 Sobic003G233900 Sobic001G106000--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic001G106000--Sobic004G285100 Sobic001G106000--Sobic009G128300 Sobic001G106000--Sobic002G023900 Sobic001G430700 Sobic001G430700 Sobic001G106000--Sobic001G430700 Sobic001G106000--Sobic003G227600 Sobic001G106000--Sobic007G153001 Sobic009G170100--Sobic006G032200 Sobic004G283300 Sobic004G283300 Sobic009G170100--Sobic004G283300 Sobic009G170100--Sobic001G050800 Sobic009G170100--Sobic004G281200 Sobic001G081600 Sobic001G081600 Sobic009G170100--Sobic001G081600 Sobic001G063600 Sobic001G063600 Sobic009G170100--Sobic001G063600 Sobic009G170100--Sobic003G342600 Sobic002G344700 Sobic002G344700 Sobic009G170100--Sobic002G344700 Sobic010G016500 Sobic010G016500 Sobic009G170100--Sobic010G016500 Sobic007G153001--Sobic001G075101 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic007G153001--Sobic002G023900 Sobic007G153001--Sobic002G342100 Sobic007G153001--Sobic002G331450 Sobic007G153001--Sobic002G037400 Sobic007G153001--Sobic006G203000 Sobic002G325600 Sobic002G325600 Sobic007G153001--Sobic002G325600
Octagon: transcription factors


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