Gene annotation
Transcriptome id Sobic.009G030200.1
Synonym KNAT6S, KNAT6L, KNAT6, Sb09g002520
Functional annotation homeobox protein knotted-1-like 6, putative, expressed
UniProt C5YZG2
Pfam PF03789 PF05920 PF03790 PF03791
Panther DB PTHR11850 PTHR11850:SF115
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G23380 : KNOTTED1-like homeobox gene 6
RAP-DB (Rice) LOC_Os05g03884.1 : homeobox protein knotted-1-like 6, putative, expressed
MaizeGDB (Corn) Zm00025a007492 , Zm00025a040695 , Zm00025a007979 , Zm00025a024290 , Zm00025a038168 , Zm00025a008357 , Zm00025a016198 , Zm00025a044961 , Zm00025a000323 , Zm00025a007981
Brachypodium KQK04078 , KQK13818 , KQK13819 , KQK20926 , PNT74062 , PNT74065 , PNT74064 , PNT74063 , KQK07913 , KQK13423 , KQK13422 , PNT72012
Barley HORVU7Hr1G114650.6 , HORVU7Hr1G114650.4 , HORVU7Hr1G114650.5 , HORVU7Hr1G114650.2 , HORVU7Hr1G114650.3 , HORVU7Hr1G114650.1 , HORVU5Hr1G098570.2 , HORVU5Hr1G098570.6 , HORVU5Hr1G098570.7 , HORVU5Hr1G098570.4 , HORVU5Hr1G098570.8 , HORVU5Hr1G098570.9 , HORVU4Hr1G009730.9 , HORVU4Hr1G009730.1 , HORVU4Hr1G009730.5 , HORVU4Hr1G003410.1 , HORVU4Hr1G003410.2 , HORVU4Hr1G003410.3 , HORVU4Hr1G003410.4 , HORVU4Hr1G003410.5 , HORVU4Hr1G003410.6 , HORVU4Hr1G003410.7 , HORVU4Hr1G003410.8 , HORVU4Hr1G009730.12 , HORVU4Hr1G009730.11 , HORVU4Hr1G009730.10 , HORVU5Hr1G098570.10 , HORVU5Hr1G098570.11 , HORVU1Hr1G015720.12 , HORVU1Hr1G015720.13 , HORVU1Hr1G015720.10 , HORVU1Hr1G015720.11 , HORVU4Hr1G009730.3 , HORVU4Hr1G009730.2 , HORVU1Hr1G015720.1 , HORVU1Hr1G015720.2 , HORVU1Hr1G015720.3 , HORVU1Hr1G015720.4 , HORVU1Hr1G015720.5 , HORVU1Hr1G015720.6 , HORVU1Hr1G015720.7 , HORVU1Hr1G015720.8 , HORVU1Hr1G015720.9 , HORVU5Hr1G098570.3 , HORVU5Hr1G098570.1 , HORVU5Hr1G098570.5 , HORVU4Hr1G003360.4 , HORVU4Hr1G003360.2 , HORVU4Hr1G003360.3 , HORVU4Hr1G003360.1
Wheat TraesCS7B02G423100 , TraesCS1A02G072800 , TraesCS5A02G405900 , TraesCS4A02G292200 , TraesCS4B02G057900 , TraesCS7D02G501000 , TraesCS7D02G501000 , TraesCS1D02G075600 , TraesCS4D02G019800 , TraesCS5B02G410600 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS1B02G135600 , TraesCS1B02G135600 , TraesCS1D02G075700 , TraesCS4A02G291900 , TraesCS1B02G091600 , TraesCS4D02G058000 , TraesCS4A02G292200 , TraesCS4D02G019600 , TraesCS4D02G019600 , TraesCS1B02G091700 , TraesCS4D02G019900 , TraesCS4A02G256700 , TraesCS5B02G454600 , TraesCS5D02G415900 , TraesCS1A02G072700 , TraesCS4A02G292100 , TraesCS4B02G021900 , TraesCS4B02G021900 , TraesCS4B02G021900
Populus -


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cDNA sequences
Sobic.009G030200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
2 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
3 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
4 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
5 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
6 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
7 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
8 Sobic.009G159900 homeodomain protein, putative, expressed -
9 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
10 Sobic.003G144200 Homeobox domain containing protein, expressed -
11 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -
12 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
13 Sobic.007G101800 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed -
14 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
15 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
16 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.010G272101 - -
18 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
19 Sobic.002G023900 Homeobox domain containing protein, expressed -
20 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi


Gene co-expression network
sample Sobic009G030200 Sobic009G030200 Sobic001G050800 Sobic001G050800 Sobic009G030200--Sobic001G050800 Sobic001G157400 Sobic001G157400 Sobic009G030200--Sobic001G157400 Sobic003G278700 Sobic003G278700 Sobic009G030200--Sobic003G278700 Sobic010G071700 Sobic010G071700 Sobic009G030200--Sobic010G071700 Sobic005G231700 Sobic005G231700 Sobic009G030200--Sobic005G231700 Sobic003G227600 Sobic003G227600 Sobic009G030200--Sobic003G227600 Sobic003G342600 Sobic003G342600 Sobic009G030200--Sobic003G342600 Sobic009G159900 Sobic009G159900 Sobic009G030200--Sobic009G159900 Sobic006G032200 Sobic006G032200 Sobic009G030200--Sobic006G032200 Sobic001G050800--Sobic001G157400 Sobic009G170100 Sobic009G170100 Sobic001G050800--Sobic009G170100 Sobic006G194600 Sobic006G194600 Sobic001G050800--Sobic006G194600 Sobic006G026400 Sobic006G026400 Sobic001G050800--Sobic006G026400 Sobic001G050800--Sobic006G032200 Sobic004G281200 Sobic004G281200 Sobic001G050800--Sobic004G281200 Sobic004G244300 Sobic004G244300 Sobic001G050800--Sobic004G244300 Sobic004G244100 Sobic004G244100 Sobic001G050800--Sobic004G244100 Sobic002G068800 Sobic002G068800 Sobic001G050800--Sobic002G068800 Sobic001G157400--Sobic001G050800 Sobic002G023900 Sobic002G023900 Sobic001G157400--Sobic002G023900 Sobic001G157400--Sobic006G026400 Sobic001G157400--Sobic002G068800 Sobic001G157400--Sobic003G278700 Sobic001G157400--Sobic003G227600 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic001G157400--Sobic009G170100 Sobic009G099000 Sobic009G099000 Sobic003G278700--Sobic009G099000 Sobic003G278700--Sobic001G157400 Sobic001G460300 Sobic001G460300 Sobic003G278700--Sobic001G460300 Sobic003G278700--Sobic001G050800 Sobic003G278700--Sobic005G231700 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G278700--Sobic003G227600 Sobic010G071700--Sobic003G342600 Sobic003G141800 Sobic003G141800 Sobic010G071700--Sobic003G141800 Sobic010G071700--Sobic001G063600 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic010G071700--Sobic009G030200 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic010G071700--Sobic006G032200 Sobic006G087900 Sobic006G087900 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic010G080400 Sobic010G080400 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic009G128300 Sobic009G128300 Sobic003G227600--Sobic009G128300 Sobic009G216900 Sobic009G216900 Sobic003G227600--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G227600--Sobic003G233900 Sobic002G182800 Sobic002G182800 Sobic003G227600--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G227600--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G227600--Sobic002G342100 Sobic001G509400 Sobic001G509400 Sobic003G227600--Sobic001G509400 Sobic001G075101 Sobic001G075101 Sobic003G227600--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic003G227600--Sobic002G331450 Sobic003G342600--Sobic009G170100 Sobic003G342600--Sobic010G071700 Sobic003G342600--Sobic006G032200 Sobic003G342600--Sobic001G063600 Sobic003G342600--Sobic003G129400 Sobic003G342600--Sobic009G159900 Sobic003G342600--Sobic009G030200 Sobic003G144200 Sobic003G144200 Sobic003G342600--Sobic003G144200 Sobic003G342600--Sobic001G050800 Sobic009G159900--Sobic006G032200 Sobic009G159900--Sobic003G144200 Sobic009G159900--Sobic009G170100 Sobic001G075800 Sobic001G075800 Sobic009G159900--Sobic001G075800 Sobic009G159900--Sobic001G157400 Sobic009G159900--Sobic003G342600 Sobic003G361300 Sobic003G361300 Sobic009G159900--Sobic003G361300 Sobic004G273200 Sobic004G273200 Sobic009G159900--Sobic004G273200 Sobic009G159900--Sobic002G023900 Sobic006G032200--Sobic009G170100 Sobic004G283300 Sobic004G283300 Sobic006G032200--Sobic004G283300 Sobic002G037400 Sobic002G037400 Sobic006G032200--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic006G032200--Sobic006G203000 Sobic006G032200--Sobic004G281200 Sobic002G344700 Sobic002G344700 Sobic006G032200--Sobic002G344700 Sobic006G032200--Sobic009G128300 Sobic006G032200--Sobic001G075101 Sobic010G016500 Sobic010G016500 Sobic006G032200--Sobic010G016500
Octagon: transcription factors


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