Gene annotation
Transcriptome id Sobic.003G129400.1
Synonym I9H, Sb03g011010, IRX9-L
Functional annotation glycosyltransferase family 43 protein, putative, expressed
UniProt Q50HW3
Pfam PF03360
Panther DB PTHR10896 PTHR10896:SF20
NCBI CDD -
KEGG Orthology K00735; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
Gene Ontology GO:0016020; membrane GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G27600 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os10g13810.1 : glycosyltransferase family 43 protein, putative, expressed
MaizeGDB (Corn) Zm00025a035217
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
2 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
3 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.001G379000 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
5 Sobic.007G180300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
6 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
7 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
8 Sobic.002G185300 transporter, putative, expressed -
9 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
10 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G245900 - -
12 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
13 Sobic.007G216500 expressed protein -
14 Sobic.010G030900 glycosyltransferase, putative, expressed -
15 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
16 Sobic.009G102600 DUF640 domain containing protein, putative, expressed -
17 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
18 Sobic.009G156600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
19 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
20 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G129400 Sobic003G129400 Sobic003G342600 Sobic003G342600 Sobic003G129400--Sobic003G342600 Sobic010G071700 Sobic010G071700 Sobic003G129400--Sobic010G071700 Sobic001G063600 Sobic001G063600 Sobic003G129400--Sobic001G063600 Sobic001G379000 Sobic001G379000 Sobic003G129400--Sobic001G379000 Sobic007G180300 Sobic007G180300 Sobic003G129400--Sobic007G180300 Sobic009G030200 Sobic009G030200 Sobic003G129400--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic003G129400--Sobic005G231700 Sobic002G185300 Sobic002G185300 Sobic003G129400--Sobic002G185300 Sobic001G403600 Sobic001G403600 Sobic003G129400--Sobic001G403600 Sobic009G170100 Sobic009G170100 Sobic003G342600--Sobic009G170100 Sobic003G342600--Sobic010G071700 Sobic006G032200 Sobic006G032200 Sobic003G342600--Sobic006G032200 Sobic003G342600--Sobic001G063600 Sobic003G342600--Sobic003G129400 Sobic009G159900 Sobic009G159900 Sobic003G342600--Sobic009G159900 Sobic003G342600--Sobic009G030200 Sobic003G144200 Sobic003G144200 Sobic003G342600--Sobic003G144200 Sobic001G050800 Sobic001G050800 Sobic003G342600--Sobic001G050800 Sobic010G071700--Sobic003G342600 Sobic003G141800 Sobic003G141800 Sobic010G071700--Sobic003G141800 Sobic010G071700--Sobic001G063600 Sobic010G071700--Sobic009G170100 Sobic010G071700--Sobic003G129400 Sobic010G071700--Sobic009G030200 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic010G071700--Sobic006G032200 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic010G080400 Sobic010G080400 Sobic001G063600--Sobic010G080400 Sobic008G159100 Sobic008G159100 Sobic001G063600--Sobic008G159100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic001G379000--Sobic003G129400 Sobic003G358200 Sobic003G358200 Sobic001G379000--Sobic003G358200 Sobic009G156600 Sobic009G156600 Sobic001G379000--Sobic009G156600 Sobic001G206300 Sobic001G206300 Sobic001G379000--Sobic001G206300 Sobic007G152500 Sobic007G152500 Sobic001G379000--Sobic007G152500 Sobic004G155200 Sobic004G155200 Sobic001G379000--Sobic004G155200 Sobic006G164000 Sobic006G164000 Sobic001G379000--Sobic006G164000 Sobic008G092400 Sobic008G092400 Sobic001G379000--Sobic008G092400 Sobic010G093400 Sobic010G093400 Sobic001G379000--Sobic010G093400 Sobic003G150400 Sobic003G150400 Sobic007G180300--Sobic003G150400 Sobic010G030900 Sobic010G030900 Sobic007G180300--Sobic010G030900 Sobic009G163900 Sobic009G163900 Sobic007G180300--Sobic009G163900 Sobic010G076700 Sobic010G076700 Sobic007G180300--Sobic010G076700 Sobic002G203000 Sobic002G203000 Sobic007G180300--Sobic002G203000 Sobic009G231400 Sobic009G231400 Sobic007G180300--Sobic009G231400 Sobic006G161400 Sobic006G161400 Sobic007G180300--Sobic006G161400 Sobic002G248100 Sobic002G248100 Sobic007G180300--Sobic002G248100 Sobic006G095600 Sobic006G095600 Sobic007G180300--Sobic006G095600 Sobic009G030200--Sobic001G050800 Sobic001G157400 Sobic001G157400 Sobic009G030200--Sobic001G157400 Sobic003G278700 Sobic003G278700 Sobic009G030200--Sobic003G278700 Sobic009G030200--Sobic010G071700 Sobic009G030200--Sobic005G231700 Sobic003G227600 Sobic003G227600 Sobic009G030200--Sobic003G227600 Sobic009G030200--Sobic003G342600 Sobic009G030200--Sobic009G159900 Sobic009G030200--Sobic006G032200 Sobic006G087900 Sobic006G087900 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic002G185300--Sobic003G129400 Sobic002G185300--Sobic004G155200 Sobic001G112000 Sobic001G112000 Sobic002G185300--Sobic001G112000 Sobic004G353600 Sobic004G353600 Sobic002G185300--Sobic004G353600 Sobic009G201500 Sobic009G201500 Sobic002G185300--Sobic009G201500 Sobic007G216500 Sobic007G216500 Sobic002G185300--Sobic007G216500 Sobic002G225300 Sobic002G225300 Sobic002G185300--Sobic002G225300 Sobic003G033700 Sobic003G033700 Sobic002G185300--Sobic003G033700 Sobic001G510400 Sobic001G510400 Sobic002G185300--Sobic001G510400 Sobic002G118600 Sobic002G118600 Sobic001G403600--Sobic002G118600 Sobic001G290400 Sobic001G290400 Sobic001G403600--Sobic001G290400 Sobic001G403600--Sobic001G081600 Sobic010G228000 Sobic010G228000 Sobic001G403600--Sobic010G228000 Sobic004G280800 Sobic004G280800 Sobic001G403600--Sobic004G280800 Sobic001G189700 Sobic001G189700 Sobic001G403600--Sobic001G189700 Sobic007G011000 Sobic007G011000 Sobic001G403600--Sobic007G011000 Sobic005G139700 Sobic005G139700 Sobic001G403600--Sobic005G139700 Sobic001G482700 Sobic001G482700 Sobic001G403600--Sobic001G482700
Octagon: transcription factors


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