Gene annotation
Transcriptome id Sobic.009G102600.1
Synonym LSH6, Sb09g016440
Functional annotation DUF640 domain containing protein, putative, expressed
UniProt C5YWA4
Pfam PF04852
Panther DB PTHR31165 PTHR31165:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os01g61310.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a022541 , Zm00025a039740 , Zm00025a037663 , Zm00025a032852 , Zm00025a056514 , Zm00025a043957 , Zm00025a019050 , Zm00025a027009 , Zm00025a037773 , Zm00025a010702 , Zm00025a043474
Brachypodium PNT71068 , KQK10399 , KQK05799 , KQK00399 , KQK17088 , PNT71069 , KQK17087 , KQK10400 , KQJ83599 , KQK01266 , KQJ97098 , KQK00400 , KQK06795
Barley HORVU3Hr1G088000.1 , HORVU1Hr1G070480.1 , HORVU3Hr1G088000.3 , HORVU3Hr1G088000.2 , HORVU3Hr1G088000.5 , HORVU3Hr1G088000.4 , HORVU3Hr1G088000.7 , HORVU3Hr1G088000.6 , HORVU3Hr1G088000.8 , HORVU1Hr1G070480.2 , HORVU1Hr1G060250.1 , HORVU2Hr1G089190.1 , HORVU2Hr1G089190.3 , HORVU2Hr1G089190.2 , HORVU2Hr1G089190.5 , HORVU2Hr1G089190.4 , HORVU2Hr1G089190.7 , HORVU2Hr1G089190.6 , HORVU2Hr1G089190.9 , HORVU2Hr1G089190.8 , HORVU6Hr1G058340.2 , HORVU6Hr1G058340.3 , HORVU6Hr1G088790.1 , HORVU6Hr1G088790.2 , HORVU6Hr1G088790.3 , HORVU6Hr1G088790.4 , HORVU6Hr1G088790.5 , HORVU6Hr1G088790.6
Wheat TraesCS1D02G294600 , TraesCS1B02G235800 , TraesCS1A02G154900
Populus -


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cDNA sequences
Sobic.009G102600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
2 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -
3 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
4 Sobic.002G040600 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
5 Sobic.001G294400 CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
6 Sobic.010G192432 - K14431: transcription factor TGA
7 Sobic.010G192366 - -
8 Sobic.003G095400 glycosyltransferase protein, putative, expressed -
9 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
10 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
12 Sobic.004G078800 transcription factor, putative, expressed K14431: transcription factor TGA
13 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
14 Sobic.002G372800 tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
16 Sobic.009G002400 polygalacturonase inhibitor precursor, putative, expressed -
17 Sobic.006G078100 FAD binding domain containing protein, expressed -
18 Sobic.006G076201 - -
19 Sobic.005G110490 - -
20 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic009G102600 Sobic009G102600 Sobic010G069900 Sobic010G069900 Sobic009G102600--Sobic010G069900 Sobic004G172100 Sobic004G172100 Sobic009G102600--Sobic004G172100 Sobic004G212300 Sobic004G212300 Sobic009G102600--Sobic004G212300 Sobic002G040600 Sobic002G040600 Sobic009G102600--Sobic002G040600 Sobic001G294400 Sobic001G294400 Sobic009G102600--Sobic001G294400 Sobic010G192432 Sobic010G192432 Sobic009G102600--Sobic010G192432 Sobic010G192366 Sobic010G192366 Sobic009G102600--Sobic010G192366 Sobic003G095400 Sobic003G095400 Sobic009G102600--Sobic003G095400 Sobic003G129400 Sobic003G129400 Sobic009G102600--Sobic003G129400 Sobic003G227700 Sobic003G227700 Sobic010G069900--Sobic003G227700 Sobic010G071400 Sobic010G071400 Sobic010G069900--Sobic010G071400 Sobic010G069900--Sobic004G212300 Sobic010G069900--Sobic010G192432 Sobic001G006201 Sobic001G006201 Sobic010G069900--Sobic001G006201 Sobic001G483600 Sobic001G483600 Sobic010G069900--Sobic001G483600 Sobic010G069900--Sobic009G102600 Sobic010G101900 Sobic010G101900 Sobic010G069900--Sobic010G101900 Sobic004G078800 Sobic004G078800 Sobic010G069900--Sobic004G078800 Sobic006G242100 Sobic006G242100 Sobic004G172100--Sobic006G242100 Sobic004G172100--Sobic003G095400 Sobic009G030200 Sobic009G030200 Sobic004G172100--Sobic009G030200 Sobic006G087900 Sobic006G087900 Sobic004G172100--Sobic006G087900 Sobic004G172100--Sobic009G102600 Sobic003G278700 Sobic003G278700 Sobic004G172100--Sobic003G278700 Sobic009G099000 Sobic009G099000 Sobic004G172100--Sobic009G099000 Sobic004G257800 Sobic004G257800 Sobic004G172100--Sobic004G257800 Sobic004G172100--Sobic001G294400 Sobic010G052200 Sobic010G052200 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic001G084100 Sobic001G084100 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic002G040600--Sobic004G212300 Sobic002G040600--Sobic001G516600 Sobic004G262500 Sobic004G262500 Sobic002G040600--Sobic004G262500 Sobic010G195500 Sobic010G195500 Sobic002G040600--Sobic010G195500 Sobic007G186100 Sobic007G186100 Sobic002G040600--Sobic007G186100 Sobic003G037800 Sobic003G037800 Sobic002G040600--Sobic003G037800 Sobic003G319500 Sobic003G319500 Sobic002G040600--Sobic003G319500 Sobic005G168800 Sobic005G168800 Sobic002G040600--Sobic005G168800 Sobic002G379200 Sobic002G379200 Sobic002G040600--Sobic002G379200 Sobic001G294400--Sobic006G242100 Sobic001G294400--Sobic004G212300 Sobic001G294400--Sobic010G069900 Sobic001G294400--Sobic001G084100 Sobic001G294400--Sobic010G071400 Sobic001G294400--Sobic010G052200 Sobic001G294400--Sobic004G172100 Sobic005G142300 Sobic005G142300 Sobic001G294400--Sobic005G142300 Sobic001G294400--Sobic009G102600 Sobic010G192432--Sobic010G192366 Sobic010G192432--Sobic004G078800 Sobic010G192432--Sobic003G227700 Sobic010G192432--Sobic001G483600 Sobic001G067100 Sobic001G067100 Sobic010G192432--Sobic001G067100 Sobic006G135300 Sobic006G135300 Sobic010G192432--Sobic006G135300 Sobic010G097200 Sobic010G097200 Sobic010G192432--Sobic010G097200 Sobic010G192432--Sobic010G071400 Sobic007G100700 Sobic007G100700 Sobic010G192432--Sobic007G100700 Sobic010G192366--Sobic010G192432 Sobic010G192366--Sobic010G097200 Sobic010G192366--Sobic001G483600 Sobic004G119800 Sobic004G119800 Sobic010G192366--Sobic004G119800 Sobic008G037900 Sobic008G037900 Sobic010G192366--Sobic008G037900 Sobic006G196400 Sobic006G196400 Sobic010G192366--Sobic006G196400 Sobic005G080600 Sobic005G080600 Sobic010G192366--Sobic005G080600 Sobic010G192366--Sobic006G135300 Sobic010G192366--Sobic007G100700 Sobic003G095400--Sobic004G172100 Sobic003G095400--Sobic004G078800 Sobic003G095400--Sobic006G087900 Sobic003G095400--Sobic010G069900 Sobic010G236500 Sobic010G236500 Sobic003G095400--Sobic010G236500 Sobic003G095400--Sobic006G242100 Sobic003G095400--Sobic001G294400 Sobic006G076201 Sobic006G076201 Sobic003G095400--Sobic006G076201 Sobic003G095400--Sobic009G102600 Sobic003G342600 Sobic003G342600 Sobic003G129400--Sobic003G342600 Sobic010G071700 Sobic010G071700 Sobic003G129400--Sobic010G071700 Sobic001G063600 Sobic001G063600 Sobic003G129400--Sobic001G063600 Sobic001G379000 Sobic001G379000 Sobic003G129400--Sobic001G379000 Sobic007G180300 Sobic007G180300 Sobic003G129400--Sobic007G180300 Sobic003G129400--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic003G129400--Sobic005G231700 Sobic002G185300 Sobic002G185300 Sobic003G129400--Sobic002G185300 Sobic001G403600 Sobic001G403600 Sobic003G129400--Sobic001G403600
Octagon: transcription factors


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