Gene annotation
Transcriptome id Sobic.002G040600.1
Synonym Sb02g003480, RHF2A
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XA80
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF45
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K19043; E3 ubiquitin-protein ligase RHF
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G22000 : RING-H2 group F2A
RAP-DB (Rice) LOC_Os03g57500.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016144 , Zm00025a037580 , Zm00025a016613
Brachypodium KQK20834
Barley HORVU2Hr1G057670.9 , HORVU2Hr1G057670.8 , HORVU2Hr1G057670.2 , HORVU2Hr1G057670.7 , HORVU2Hr1G057670.6 , HORVU2Hr1G057670.5 , HORVU2Hr1G057670.4 , HORVU2Hr1G057670.13 , HORVU2Hr1G057670.12 , HORVU2Hr1G057670.11 , HORVU2Hr1G057670.10 , HORVU2Hr1G057670.14
Wheat TraesCS2D02G250100 , TraesCS2B02G268800 , TraesCS2A02G248400
Populus -


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cDNA sequences
Sobic.002G040600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
2 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
3 Sobic.004G262500 lectin-like protein kinase, putative, expressed -
4 Sobic.010G195500 reductase, putative, expressed -
5 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
6 Sobic.003G037800 transferase family protein, putative, expressed -
7 Sobic.003G319500 receptor protein kinase, putative, expressed -
8 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
9 Sobic.002G379200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
10 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
11 Sobic.003G119500 expressed protein -
12 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
13 Sobic.001G235800 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
15 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.005G093000 - -
17 Sobic.001G432000 LYR motif containing protein, putative, expressed -
18 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
19 Sobic.001G161000 AGG2, putative, expressed -
20 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -


Gene co-expression network
sample Sobic002G040600 Sobic002G040600 Sobic004G212300 Sobic004G212300 Sobic002G040600--Sobic004G212300 Sobic001G516600 Sobic001G516600 Sobic002G040600--Sobic001G516600 Sobic004G262500 Sobic004G262500 Sobic002G040600--Sobic004G262500 Sobic010G195500 Sobic010G195500 Sobic002G040600--Sobic010G195500 Sobic007G186100 Sobic007G186100 Sobic002G040600--Sobic007G186100 Sobic003G037800 Sobic003G037800 Sobic002G040600--Sobic003G037800 Sobic003G319500 Sobic003G319500 Sobic002G040600--Sobic003G319500 Sobic005G168800 Sobic005G168800 Sobic002G040600--Sobic005G168800 Sobic002G379200 Sobic002G379200 Sobic002G040600--Sobic002G379200 Sobic010G052200 Sobic010G052200 Sobic004G212300--Sobic010G052200 Sobic001G532200 Sobic001G532200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic001G084100 Sobic001G084100 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic009G130100 Sobic009G130100 Sobic004G262500--Sobic009G130100 Sobic006G274933 Sobic006G274933 Sobic004G262500--Sobic006G274933 Sobic003G404600 Sobic003G404600 Sobic004G262500--Sobic003G404600 Sobic003G417100 Sobic003G417100 Sobic004G262500--Sobic003G417100 Sobic006G256900 Sobic006G256900 Sobic004G262500--Sobic006G256900 Sobic009G219200 Sobic009G219200 Sobic004G262500--Sobic009G219200 Sobic004G024100 Sobic004G024100 Sobic004G262500--Sobic004G024100 Sobic004G042000 Sobic004G042000 Sobic004G262500--Sobic004G042000 Sobic006G197100 Sobic006G197100 Sobic004G262500--Sobic006G197100 Sobic005G093000 Sobic005G093000 Sobic010G195500--Sobic005G093000 Sobic002G312900 Sobic002G312900 Sobic010G195500--Sobic002G312900 Sobic002G329000 Sobic002G329000 Sobic010G195500--Sobic002G329000 Sobic010G195500--Sobic010G268400 Sobic010G008400 Sobic010G008400 Sobic010G195500--Sobic010G008400 Sobic001G147900 Sobic001G147900 Sobic010G195500--Sobic001G147900 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic004G101300 Sobic004G101300 Sobic010G195500--Sobic004G101300 Sobic001G494000 Sobic001G494000 Sobic007G186100--Sobic001G494000 Sobic003G343900 Sobic003G343900 Sobic007G186100--Sobic003G343900 Sobic007G186100--Sobic003G119500 Sobic007G186100--Sobic004G062500 Sobic010G062100 Sobic010G062100 Sobic007G186100--Sobic010G062100 Sobic007G186100--Sobic004G212300 Sobic003G219800 Sobic003G219800 Sobic007G186100--Sobic003G219800 Sobic009G181800 Sobic009G181800 Sobic007G186100--Sobic009G181800 Sobic003G316000 Sobic003G316000 Sobic007G186100--Sobic003G316000 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic004G321300 Sobic004G321300 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic002G176100 Sobic002G176100 Sobic003G319500--Sobic002G176100 Sobic003G417200 Sobic003G417200 Sobic003G319500--Sobic003G417200 Sobic009G111000 Sobic009G111000 Sobic003G319500--Sobic009G111000 Sobic002G213600 Sobic002G213600 Sobic003G319500--Sobic002G213600 Sobic001G304100 Sobic001G304100 Sobic003G319500--Sobic001G304100 Sobic001G139100 Sobic001G139100 Sobic003G319500--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic003G319500--Sobic001G169500 Sobic005G107900 Sobic005G107900 Sobic003G319500--Sobic005G107900 Sobic003G084400 Sobic003G084400 Sobic003G319500--Sobic003G084400 Sobic003G416300 Sobic003G416300 Sobic005G168800--Sobic003G416300 Sobic003G079400 Sobic003G079400 Sobic005G168800--Sobic003G079400 Sobic001G082600 Sobic001G082600 Sobic005G168800--Sobic001G082600 Sobic004G046200 Sobic004G046200 Sobic005G168800--Sobic004G046200 Sobic008G106700 Sobic008G106700 Sobic005G168800--Sobic008G106700 Sobic003G050200 Sobic003G050200 Sobic005G168800--Sobic003G050200 Sobic009G179900 Sobic009G179900 Sobic005G168800--Sobic009G179900 Sobic005G168800--Sobic001G139100 Sobic001G325400 Sobic001G325400 Sobic005G168800--Sobic001G325400 Sobic006G125100 Sobic006G125100 Sobic002G379200--Sobic006G125100 Sobic002G379200--Sobic001G325400 Sobic001G503100 Sobic001G503100 Sobic002G379200--Sobic001G503100 Sobic010G185000 Sobic010G185000 Sobic002G379200--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic002G379200--Sobic001G119000 Sobic002G379200--Sobic004G046200 Sobic002G379200--Sobic009G111000 Sobic002G379200--Sobic001G389000 Sobic002G379200--Sobic003G429000
Octagon: transcription factors


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