Gene annotation
Transcriptome id Sobic.002G379200.5,Sobic.002G379200.4,Sobic.002G379200.2,Sobic.002G379200.1,Sobic.002G379200.3
Synonym Sb02g039610
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
dehydrogenase, putative, expressed
UniProt A0A1B6QFP7 , A0A1B6QFL2 , A0A1B6QFL5 , A0A1B6QFM5 , A0A1B6QFQ2
Pfam PF08240 PF00107 PF00107 PF08240
Panther DB PTHR11695 PTHR11695:SF494
NCBI CDD KOG0022; Alcohol dehydrogenase, class III
KEGG Orthology K00121; frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G22110 : Zinc-binding alcohol dehydrogenase family protein,GroES-like zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os07g42924.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a003824
Brachypodium KQK15216 , KQK15214 , KQK15215 , PNT74742 , KQJ96074 , PNT74741 , KQK15213
Barley HORVU2Hr1G029960.18 , HORVU2Hr1G029960.19 , HORVU2Hr1G029960.14 , HORVU2Hr1G029960.15 , HORVU2Hr1G029960.16 , HORVU2Hr1G029960.17 , HORVU2Hr1G029960.10 , HORVU2Hr1G029960.11 , HORVU2Hr1G029960.12 , HORVU2Hr1G029960.13 , HORVU4Hr1G078470.16 , HORVU4Hr1G078470.17 , HORVU4Hr1G078470.14 , HORVU4Hr1G078470.15 , HORVU4Hr1G078470.13 , HORVU4Hr1G078470.10 , HORVU4Hr1G078470.11 , HORVU4Hr1G078470.18 , HORVU4Hr1G078470.19 , HORVU5Hr1G057090.1 , HORVU5Hr1G057090.2 , HORVU5Hr1G057090.3 , HORVU5Hr1G057090.4 , HORVU5Hr1G057090.5 , HORVU2Hr1G029960.6 , HORVU2Hr1G029960.7 , HORVU2Hr1G029960.4 , HORVU2Hr1G029960.5 , HORVU2Hr1G029960.2 , HORVU2Hr1G029960.3 , HORVU2Hr1G029960.1 , HORVU2Hr1G029960.8 , HORVU2Hr1G029960.9 , HORVU4Hr1G016810.8 , HORVU4Hr1G078460.13 , HORVU4Hr1G078460.12 , HORVU4Hr1G078460.11 , HORVU4Hr1G016810.9 , HORVU4Hr1G078460.15 , HORVU4Hr1G078460.14 , HORVU4Hr1G016810.2 , HORVU4Hr1G016810.3 , HORVU4Hr1G016810.1 , HORVU4Hr1G016810.6 , HORVU4Hr1G016810.7 , HORVU4Hr1G016810.4 , HORVU4Hr1G016810.5 , HORVU4Hr1G078460.10 , HORVU4Hr1G078470.5 , HORVU4Hr1G078470.6 , HORVU4Hr1G078470.7 , HORVU4Hr1G078470.1 , HORVU4Hr1G078470.2 , HORVU4Hr1G078470.3 , HORVU4Hr1G016810.10 , HORVU4Hr1G016810.12 , HORVU4Hr1G016810.14 , HORVU4Hr1G016810.15 , HORVU4Hr1G078460.3 , HORVU4Hr1G078460.2 , HORVU4Hr1G078460.1 , HORVU4Hr1G078460.7 , HORVU4Hr1G078460.6 , HORVU4Hr1G078460.5 , HORVU4Hr1G078460.4 , HORVU4Hr1G078470.8 , HORVU4Hr1G078460.8
Wheat TraesCS5B02G189200 , TraesCS4A02G406100 , TraesCS4D02G303900 , TraesCS4A02G202100 , TraesCS4A02G202100 , TraesCS2A02G163900 , TraesCS2A02G163900 , TraesCS2A02G163900 , TraesCS5A02G193900 , TraesCS2B02G189800 , TraesCS2D02G170900 , TraesCS2B02G189700 , TraesCS4A02G406100 , TraesCS4B02G106300 , TraesCS4D02G303800 , TraesCS4D02G303800 , TraesCS4B02G106300 , TraesCS2D02G170800 , TraesCS5D02G196300 , TraesCS5D02G196300 , TraesCS4D02G103000 , TraesCS4B02G305700 , TraesCS4D02G103000 , TraesCS4B02G305600
Populus -


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cDNA sequences
Sobic.002G379200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G125100 ubiquitin family protein, putative, expressed -
2 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
3 Sobic.001G503100 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
4 Sobic.010G185000 VQ domain containing protein, putative, expressed -
5 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
7 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
8 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
9 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
10 Sobic.001G462700 expressed protein -
11 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
12 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
13 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
15 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
16 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
17 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
18 Sobic.009G186600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.010G001000 expressed protein -
20 Sobic.002G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed K01188: beta-glucosidase


Gene co-expression network
sample Sobic002G379200 Sobic002G379200 Sobic006G125100 Sobic006G125100 Sobic002G379200--Sobic006G125100 Sobic001G325400 Sobic001G325400 Sobic002G379200--Sobic001G325400 Sobic001G503100 Sobic001G503100 Sobic002G379200--Sobic001G503100 Sobic010G185000 Sobic010G185000 Sobic002G379200--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic002G379200--Sobic001G119000 Sobic004G046200 Sobic004G046200 Sobic002G379200--Sobic004G046200 Sobic009G111000 Sobic009G111000 Sobic002G379200--Sobic009G111000 Sobic001G389000 Sobic001G389000 Sobic002G379200--Sobic001G389000 Sobic003G429000 Sobic003G429000 Sobic002G379200--Sobic003G429000 Sobic006G125100--Sobic001G503100 Sobic010G063000 Sobic010G063000 Sobic006G125100--Sobic010G063000 Sobic002G247600 Sobic002G247600 Sobic006G125100--Sobic002G247600 Sobic002G125700 Sobic002G125700 Sobic006G125100--Sobic002G125700 Sobic006G125100--Sobic010G185000 Sobic004G348400 Sobic004G348400 Sobic006G125100--Sobic004G348400 Sobic001G333400 Sobic001G333400 Sobic006G125100--Sobic001G333400 Sobic003G255500 Sobic003G255500 Sobic006G125100--Sobic003G255500 Sobic006G277600 Sobic006G277600 Sobic006G125100--Sobic006G277600 Sobic006G039100 Sobic006G039100 Sobic001G325400--Sobic006G039100 Sobic001G325400--Sobic009G111000 Sobic001G325400--Sobic002G125700 Sobic001G462700 Sobic001G462700 Sobic001G325400--Sobic001G462700 Sobic009G077800 Sobic009G077800 Sobic001G325400--Sobic009G077800 Sobic002G017800 Sobic002G017800 Sobic001G325400--Sobic002G017800 Sobic009G231000 Sobic009G231000 Sobic001G325400--Sobic009G231000 Sobic007G087200 Sobic007G087200 Sobic001G325400--Sobic007G087200 Sobic003G117600 Sobic003G117600 Sobic001G325400--Sobic003G117600 Sobic001G503100--Sobic002G125700 Sobic001G503100--Sobic006G277600 Sobic003G352300 Sobic003G352300 Sobic001G503100--Sobic003G352300 Sobic001G503100--Sobic006G125100 Sobic010G052700 Sobic010G052700 Sobic001G503100--Sobic010G052700 Sobic004G107700 Sobic004G107700 Sobic001G503100--Sobic004G107700 Sobic003G255200 Sobic003G255200 Sobic001G503100--Sobic003G255200 Sobic002G004900 Sobic002G004900 Sobic001G503100--Sobic002G004900 Sobic001G503100--Sobic003G255500 Sobic010G185000--Sobic002G247600 Sobic005G018700 Sobic005G018700 Sobic010G185000--Sobic005G018700 Sobic007G227300 Sobic007G227300 Sobic010G185000--Sobic007G227300 Sobic009G240600 Sobic009G240600 Sobic010G185000--Sobic009G240600 Sobic010G185000--Sobic004G348400 Sobic002G375400 Sobic002G375400 Sobic010G185000--Sobic002G375400 Sobic001G481400 Sobic001G481400 Sobic010G185000--Sobic001G481400 Sobic005G206601 Sobic005G206601 Sobic010G185000--Sobic005G206601 Sobic007G151300 Sobic007G151300 Sobic010G185000--Sobic007G151300 Sobic001G119100 Sobic001G119100 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic002G245100 Sobic002G245100 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G119000--Sobic001G389000 Sobic008G106700 Sobic008G106700 Sobic004G046200--Sobic008G106700 Sobic006G044100 Sobic006G044100 Sobic004G046200--Sobic006G044100 Sobic009G187200 Sobic009G187200 Sobic004G046200--Sobic009G187200 Sobic006G199800 Sobic006G199800 Sobic004G046200--Sobic006G199800 Sobic003G084400 Sobic003G084400 Sobic004G046200--Sobic003G084400 Sobic004G046200--Sobic003G255200 Sobic001G500000 Sobic001G500000 Sobic004G046200--Sobic001G500000 Sobic003G079400 Sobic003G079400 Sobic004G046200--Sobic003G079400 Sobic004G046200--Sobic009G111000 Sobic009G111000--Sobic002G017800 Sobic002G176100 Sobic002G176100 Sobic009G111000--Sobic002G176100 Sobic001G367600 Sobic001G367600 Sobic009G111000--Sobic001G367600 Sobic003G417200 Sobic003G417200 Sobic009G111000--Sobic003G417200 Sobic009G111000--Sobic001G325400 Sobic003G426400 Sobic003G426400 Sobic009G111000--Sobic003G426400 Sobic002G055700 Sobic002G055700 Sobic009G111000--Sobic002G055700 Sobic009G111000--Sobic001G500000 Sobic003G319500 Sobic003G319500 Sobic009G111000--Sobic003G319500 Sobic009G159400 Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic001G389000--Sobic003G429000 Sobic003G429000--Sobic003G037800 Sobic003G429000--Sobic005G018700 Sobic001G050100 Sobic001G050100 Sobic003G429000--Sobic001G050100 Sobic003G429000--Sobic001G389000 Sobic002G329000 Sobic002G329000 Sobic003G429000--Sobic002G329000 Sobic003G429000--Sobic002G245100 Sobic003G429000--Sobic009G159400 Sobic007G184600 Sobic007G184600 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100
Octagon: transcription factors


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