Gene annotation
Transcriptome id Sobic.009G002400.2
Synonym PGIP1, Sb09g000430, ATPGIP1
Functional annotation polygalacturonase inhibitor precursor, putative, expressed
UniProt C5YXZ2
Pfam PF08263 PF13855
Panther DB PTHR27000 PTHR27000:SF57
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G06860 : polygalacturonase inhibiting protein 1
RAP-DB (Rice) LOC_Os05g01370.1 : polygalacturonase inhibitor precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041003 , Zm00025a041002
Brachypodium KQK08129
Barley HORVU1Hr1G002410.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G039600 expressed protein -
2 Sobic.006G274933 - -
3 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.003G119500 expressed protein -
6 Sobic.004G159733 - -
7 Sobic.003G411200 CRAL/TRIO domain containing protein, expressed -
8 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
9 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
10 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
11 Sobic.004G171700 U-box domain-containing protein, putative, expressed -
12 Sobic.010G064000 expressed protein -
13 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
14 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -
15 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
16 Sobic.001G389700 VQ domain containing protein, putative, expressed -
17 Sobic.009G109000 expressed protein -
18 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
19 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
20 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein


Gene co-expression network
sample Sobic009G002400 Sobic009G002400 Sobic003G039600 Sobic003G039600 Sobic009G002400--Sobic003G039600 Sobic006G274933 Sobic006G274933 Sobic009G002400--Sobic006G274933 Sobic010G071400 Sobic010G071400 Sobic009G002400--Sobic010G071400 Sobic001G238800 Sobic001G238800 Sobic009G002400--Sobic001G238800 Sobic003G119500 Sobic003G119500 Sobic009G002400--Sobic003G119500 Sobic004G159733 Sobic004G159733 Sobic009G002400--Sobic004G159733 Sobic003G411200 Sobic003G411200 Sobic009G002400--Sobic003G411200 Sobic003G311800 Sobic003G311800 Sobic009G002400--Sobic003G311800 Sobic001G532200 Sobic001G532200 Sobic009G002400--Sobic001G532200 Sobic003G039600--Sobic009G002400 Sobic003G039600--Sobic006G274933 Sobic007G149800 Sobic007G149800 Sobic003G039600--Sobic007G149800 Sobic003G039600--Sobic003G411200 Sobic003G039600--Sobic001G238800 Sobic009G106400 Sobic009G106400 Sobic003G039600--Sobic009G106400 Sobic007G090460 Sobic007G090460 Sobic003G039600--Sobic007G090460 Sobic007G218800 Sobic007G218800 Sobic003G039600--Sobic007G218800 Sobic010G088800 Sobic010G088800 Sobic003G039600--Sobic010G088800 Sobic002G183700 Sobic002G183700 Sobic006G274933--Sobic002G183700 Sobic006G274933--Sobic003G311800 Sobic003G269600 Sobic003G269600 Sobic006G274933--Sobic003G269600 Sobic003G140700 Sobic003G140700 Sobic006G274933--Sobic003G140700 Sobic002G361200 Sobic002G361200 Sobic006G274933--Sobic002G361200 Sobic001G062500 Sobic001G062500 Sobic006G274933--Sobic001G062500 Sobic003G399600 Sobic003G399600 Sobic006G274933--Sobic003G399600 Sobic006G225500 Sobic006G225500 Sobic006G274933--Sobic006G225500 Sobic003G121100 Sobic003G121100 Sobic006G274933--Sobic003G121100 Sobic010G071400--Sobic006G274933 Sobic003G227700 Sobic003G227700 Sobic010G071400--Sobic003G227700 Sobic010G071400--Sobic002G183700 Sobic010G071400--Sobic003G119500 Sobic004G029100 Sobic004G029100 Sobic010G071400--Sobic004G029100 Sobic004G322100 Sobic004G322100 Sobic010G071400--Sobic004G322100 Sobic010G071400--Sobic003G140700 Sobic008G019800 Sobic008G019800 Sobic010G071400--Sobic008G019800 Sobic006G256900 Sobic006G256900 Sobic010G071400--Sobic006G256900 Sobic001G238800--Sobic009G106400 Sobic010G106500 Sobic010G106500 Sobic001G238800--Sobic010G106500 Sobic003G360600 Sobic003G360600 Sobic001G238800--Sobic003G360600 Sobic001G238800--Sobic003G411200 Sobic010G271300 Sobic010G271300 Sobic001G238800--Sobic010G271300 Sobic001G238800--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic001G238800--Sobic009G109000 Sobic005G067500 Sobic005G067500 Sobic001G238800--Sobic005G067500 Sobic003G427800 Sobic003G427800 Sobic001G238800--Sobic003G427800 Sobic010G212500 Sobic010G212500 Sobic003G119500--Sobic010G212500 Sobic003G119500--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic003G119500--Sobic002G003800 Sobic003G119500--Sobic009G109000 Sobic001G049900 Sobic001G049900 Sobic003G119500--Sobic001G049900 Sobic003G119500--Sobic006G274933 Sobic004G348800 Sobic004G348800 Sobic003G119500--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic003G119500--Sobic004G297900 Sobic010G085800 Sobic010G085800 Sobic003G119500--Sobic010G085800 Sobic005G018700 Sobic005G018700 Sobic004G159733--Sobic005G018700 Sobic010G270500 Sobic010G270500 Sobic004G159733--Sobic010G270500 Sobic007G151300 Sobic007G151300 Sobic004G159733--Sobic007G151300 Sobic001G050100 Sobic001G050100 Sobic004G159733--Sobic001G050100 Sobic002G336700 Sobic002G336700 Sobic004G159733--Sobic002G336700 Sobic010G185000 Sobic010G185000 Sobic004G159733--Sobic010G185000 Sobic006G103000 Sobic006G103000 Sobic004G159733--Sobic006G103000 Sobic003G007600 Sobic003G007600 Sobic004G159733--Sobic003G007600 Sobic003G299300 Sobic003G299300 Sobic004G159733--Sobic003G299300 Sobic003G411200--Sobic003G311800 Sobic003G411200--Sobic004G297900 Sobic003G411200--Sobic001G238800 Sobic003G411200--Sobic009G109000 Sobic003G411200--Sobic002G183700 Sobic001G300500 Sobic001G300500 Sobic003G411200--Sobic001G300500 Sobic003G411200--Sobic001G049900 Sobic001G430100 Sobic001G430100 Sobic003G411200--Sobic001G430100 Sobic006G235200 Sobic006G235200 Sobic003G411200--Sobic006G235200 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic006G197100 Sobic006G197100 Sobic003G311800--Sobic006G197100 Sobic003G311800--Sobic006G274933 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000 Sobic001G516600 Sobic001G516600 Sobic001G532200--Sobic001G516600 Sobic001G084100 Sobic001G084100 Sobic001G532200--Sobic001G084100 Sobic004G212300 Sobic004G212300 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic010G052200 Sobic010G052200 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic009G027900 Sobic009G027900 Sobic001G532200--Sobic009G027900
Octagon: transcription factors


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