Gene annotation
Transcriptome id Sobic.001G379000.1
Synonym PYD4, Sb01g035960
Functional annotation aminotransferase, putative, expressed
UniProt C5X0R5
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF77
NCBI CDD -
KEGG Orthology K00827; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT3G08860 : PYRIMIDINE 4
RAP-DB (Rice) LOC_Os03g21960.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a002372
Brachypodium KQK21776 , KQK09638
Barley -
Wheat TraesCS4A02G137000 , TraesCS4B02G167100 , TraesCS4D02G170300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
2 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
3 Sobic.009G156600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
4 Sobic.001G206300 dof zinc finger domain containing protein, putative, expressed -
5 Sobic.007G152500 cytochrome P450, putative, expressed -
6 Sobic.004G155200 expressed protein -
7 Sobic.006G164000 expressed protein -
8 Sobic.008G092400 - -
9 Sobic.010G093400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Starch synthesis(PubMedID : 31624872)@Starch Synthase IIa(PubMedID : 21853065)@soluble starch synthase 2-3, chloroplast precursor, putative, expressed K00703: starch synthase
10 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
11 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
12 Sobic.001G502700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
13 Sobic.002G185300 transporter, putative, expressed -
14 Sobic.003G197300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AR791, putative, expressed -
15 Sobic.007G180300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
16 Sobic.007G216500 expressed protein -
17 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.001G286000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
20 Sobic.001G510400 cytochrome P450 86A1, putative, expressed -


Gene co-expression network
sample Sobic001G379000 Sobic001G379000 Sobic003G129400 Sobic003G129400 Sobic001G379000--Sobic003G129400 Sobic003G358200 Sobic003G358200 Sobic001G379000--Sobic003G358200 Sobic009G156600 Sobic009G156600 Sobic001G379000--Sobic009G156600 Sobic001G206300 Sobic001G206300 Sobic001G379000--Sobic001G206300 Sobic007G152500 Sobic007G152500 Sobic001G379000--Sobic007G152500 Sobic004G155200 Sobic004G155200 Sobic001G379000--Sobic004G155200 Sobic006G164000 Sobic006G164000 Sobic001G379000--Sobic006G164000 Sobic008G092400 Sobic008G092400 Sobic001G379000--Sobic008G092400 Sobic010G093400 Sobic010G093400 Sobic001G379000--Sobic010G093400 Sobic003G342600 Sobic003G342600 Sobic003G129400--Sobic003G342600 Sobic010G071700 Sobic010G071700 Sobic003G129400--Sobic010G071700 Sobic001G063600 Sobic001G063600 Sobic003G129400--Sobic001G063600 Sobic003G129400--Sobic001G379000 Sobic007G180300 Sobic007G180300 Sobic003G129400--Sobic007G180300 Sobic009G030200 Sobic009G030200 Sobic003G129400--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic003G129400--Sobic005G231700 Sobic002G185300 Sobic002G185300 Sobic003G129400--Sobic002G185300 Sobic001G403600 Sobic001G403600 Sobic003G129400--Sobic001G403600 Sobic003G358200--Sobic010G093400 Sobic002G420800 Sobic002G420800 Sobic003G358200--Sobic002G420800 Sobic003G358200--Sobic007G152500 Sobic003G358200--Sobic006G164000 Sobic001G067000 Sobic001G067000 Sobic003G358200--Sobic001G067000 Sobic003G358200--Sobic001G379000 Sobic001G294600 Sobic001G294600 Sobic003G358200--Sobic001G294600 Sobic001G419700 Sobic001G419700 Sobic003G358200--Sobic001G419700 Sobic010G207400 Sobic010G207400 Sobic003G358200--Sobic010G207400 Sobic009G000700 Sobic009G000700 Sobic009G156600--Sobic009G000700 Sobic004G155150 Sobic004G155150 Sobic009G156600--Sobic004G155150 Sobic004G310600 Sobic004G310600 Sobic009G156600--Sobic004G310600 Sobic004G245900 Sobic004G245900 Sobic009G156600--Sobic004G245900 Sobic007G089533 Sobic007G089533 Sobic009G156600--Sobic007G089533 Sobic009G000801 Sobic009G000801 Sobic009G156600--Sobic009G000801 Sobic003G078501 Sobic003G078501 Sobic009G156600--Sobic003G078501 Sobic009G216900 Sobic009G216900 Sobic009G156600--Sobic009G216900 Sobic003G227600 Sobic003G227600 Sobic009G156600--Sobic003G227600 Sobic003G197300 Sobic003G197300 Sobic001G206300--Sobic003G197300 Sobic001G206300--Sobic001G379000 Sobic007G034600 Sobic007G034600 Sobic001G206300--Sobic007G034600 Sobic003G436500 Sobic003G436500 Sobic001G206300--Sobic003G436500 Sobic001G206300--Sobic003G358200 Sobic006G096300 Sobic006G096300 Sobic001G206300--Sobic006G096300 Sobic001G206300--Sobic003G129400 Sobic001G206300--Sobic006G164000 Sobic002G400400 Sobic002G400400 Sobic001G206300--Sobic002G400400 Sobic007G152500--Sobic010G093400 Sobic007G152500--Sobic002G420800 Sobic007G152500--Sobic003G358200 Sobic005G198700 Sobic005G198700 Sobic007G152500--Sobic005G198700 Sobic007G204600 Sobic007G204600 Sobic007G152500--Sobic007G204600 Sobic002G053100 Sobic002G053100 Sobic007G152500--Sobic002G053100 Sobic005G090500 Sobic005G090500 Sobic007G152500--Sobic005G090500 Sobic001G037800 Sobic001G037800 Sobic007G152500--Sobic001G037800 Sobic006G031000 Sobic006G031000 Sobic007G152500--Sobic006G031000 Sobic001G502700 Sobic001G502700 Sobic004G155200--Sobic001G502700 Sobic001G286000 Sobic001G286000 Sobic004G155200--Sobic001G286000 Sobic002G225300 Sobic002G225300 Sobic004G155200--Sobic002G225300 Sobic004G155200--Sobic002G185300 Sobic004G155200--Sobic008G092400 Sobic001G037150 Sobic001G037150 Sobic004G155200--Sobic001G037150 Sobic004G155200--Sobic004G155150 Sobic001G005700 Sobic001G005700 Sobic004G155200--Sobic001G005700 Sobic006G267900 Sobic006G267900 Sobic004G155200--Sobic006G267900 Sobic006G164000--Sobic003G358200 Sobic004G155300 Sobic004G155300 Sobic006G164000--Sobic004G155300 Sobic005G084900 Sobic005G084900 Sobic006G164000--Sobic005G084900 Sobic006G164000--Sobic001G419700 Sobic006G164000--Sobic002G420800 Sobic003G159500 Sobic003G159500 Sobic006G164000--Sobic003G159500 Sobic004G345100 Sobic004G345100 Sobic006G164000--Sobic004G345100 Sobic006G164000--Sobic002G400400 Sobic001G170500 Sobic001G170500 Sobic006G164000--Sobic001G170500 Sobic008G092400--Sobic004G155200 Sobic004G331300 Sobic004G331300 Sobic008G092400--Sobic004G331300 Sobic008G092400--Sobic004G155150 Sobic003G367350 Sobic003G367350 Sobic008G092400--Sobic003G367350 Sobic001G159850 Sobic001G159850 Sobic008G092400--Sobic001G159850 Sobic010G093400--Sobic007G152500 Sobic010G093400--Sobic007G204600 Sobic010G273800 Sobic010G273800 Sobic010G093400--Sobic010G273800 Sobic010G093400--Sobic003G358200 Sobic003G230500 Sobic003G230500 Sobic010G093400--Sobic003G230500 Sobic010G093400--Sobic002G420800 Sobic002G100000 Sobic002G100000 Sobic010G093400--Sobic002G100000 Sobic004G212350 Sobic004G212350 Sobic010G093400--Sobic004G212350 Sobic005G171800 Sobic005G171800 Sobic010G093400--Sobic005G171800
Octagon: transcription factors


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