Gene annotation
Transcriptome id Sobic.003G197300.2,Sobic.003G197300.3
Synonym AR791, Sb03g026010
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
AR791, putative, expressed
UniProt C5XNU2
Pfam -
Panther DB PTHR31342 PTHR31342:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52080 : actin binding protein family
RAP-DB (Rice) LOC_Os01g39890.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a028493
Brachypodium KQK08440 , PNT72255
Barley HORVU3Hr1G050440.1 , HORVU3Hr1G050440.2 , HORVU3Hr1G050440.3 , HORVU3Hr1G050440.4 , HORVU3Hr1G050440.5 , HORVU3Hr1G050440.6 , HORVU3Hr1G050440.7 , HORVU3Hr1G050440.8 , HORVU3Hr1G050440.9 , HORVU3Hr1G050440.12 , HORVU3Hr1G050440.13 , HORVU3Hr1G050440.10 , HORVU3Hr1G050440.11 , HORVU3Hr1G050440.16 , HORVU3Hr1G050440.17 , HORVU3Hr1G050440.14 , HORVU3Hr1G050440.15
Wheat TraesCS3D02G538000 , TraesCS3D02G538000 , TraesCS3A02G208700 , TraesCS3B02G610000 , TraesCS3B02G610000 , TraesCS3B02G610000 , TraesCS3B02G610000 , TraesCS3D02G211600 , TraesCS3B02G235000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G197300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110421 - -
2 Sobic.001G206300 dof zinc finger domain containing protein, putative, expressed -
3 Sobic.002G225300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CPuORF39 - conserved peptide uORF-containing transcript, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.001G510400 cytochrome P450 86A1, putative, expressed -
5 Sobic.005G061033 - -
6 Sobic.002G185300 transporter, putative, expressed -
7 Sobic.003G289900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ENTH domain containing protein, expressed K12471: epsin
8 Sobic.005G061000 ABC-2 type transporter domain containing protein, expressed -
9 Sobic.003G281600 lachrymatory factor synthase, putative, expressed -
10 Sobic.003G409800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
11 Sobic.003G333900 pentatricopeptide repeat-containing protein, putative, expressed -
12 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
13 Sobic.001G502700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
14 Sobic.001G310700 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
15 Sobic.001G379000 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
16 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
17 Sobic.006G107400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
18 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
19 Sobic.002G134400 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
20 Sobic.006G119600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@GRAM and C2 domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G197300 Sobic003G197300 Sobic005G110421 Sobic005G110421 Sobic003G197300--Sobic005G110421 Sobic001G206300 Sobic001G206300 Sobic003G197300--Sobic001G206300 Sobic002G225300 Sobic002G225300 Sobic003G197300--Sobic002G225300 Sobic001G510400 Sobic001G510400 Sobic003G197300--Sobic001G510400 Sobic005G061033 Sobic005G061033 Sobic003G197300--Sobic005G061033 Sobic002G185300 Sobic002G185300 Sobic003G197300--Sobic002G185300 Sobic003G289900 Sobic003G289900 Sobic003G197300--Sobic003G289900 Sobic005G061000 Sobic005G061000 Sobic003G197300--Sobic005G061000 Sobic003G281600 Sobic003G281600 Sobic003G197300--Sobic003G281600 Sobic005G110421--Sobic003G281600 Sobic006G223800 Sobic006G223800 Sobic005G110421--Sobic006G223800 Sobic005G110421--Sobic003G197300 Sobic005G110421--Sobic001G510400 Sobic003G358200 Sobic003G358200 Sobic005G110421--Sobic003G358200 Sobic001G112000 Sobic001G112000 Sobic005G110421--Sobic001G112000 Sobic008G010900 Sobic008G010900 Sobic005G110421--Sobic008G010900 Sobic005G110421--Sobic002G185300 Sobic010G093400 Sobic010G093400 Sobic005G110421--Sobic010G093400 Sobic001G206300--Sobic003G197300 Sobic001G379000 Sobic001G379000 Sobic001G206300--Sobic001G379000 Sobic007G034600 Sobic007G034600 Sobic001G206300--Sobic007G034600 Sobic003G436500 Sobic003G436500 Sobic001G206300--Sobic003G436500 Sobic001G206300--Sobic003G358200 Sobic006G096300 Sobic006G096300 Sobic001G206300--Sobic006G096300 Sobic003G129400 Sobic003G129400 Sobic001G206300--Sobic003G129400 Sobic006G164000 Sobic006G164000 Sobic001G206300--Sobic006G164000 Sobic002G400400 Sobic002G400400 Sobic001G206300--Sobic002G400400 Sobic004G236550 Sobic004G236550 Sobic002G225300--Sobic004G236550 Sobic004G155200 Sobic004G155200 Sobic002G225300--Sobic004G155200 Sobic001G005700 Sobic001G005700 Sobic002G225300--Sobic001G005700 Sobic002G225300--Sobic003G289900 Sobic007G025800 Sobic007G025800 Sobic002G225300--Sobic007G025800 Sobic007G131700 Sobic007G131700 Sobic002G225300--Sobic007G131700 Sobic001G037150 Sobic001G037150 Sobic002G225300--Sobic001G037150 Sobic003G225900 Sobic003G225900 Sobic002G225300--Sobic003G225900 Sobic003G332000 Sobic003G332000 Sobic002G225300--Sobic003G332000 Sobic001G510400--Sobic005G110421 Sobic001G510400--Sobic003G197300 Sobic001G510400--Sobic002G185300 Sobic002G342100 Sobic002G342100 Sobic001G510400--Sobic002G342100 Sobic001G510400--Sobic001G112000 Sobic003G304100 Sobic003G304100 Sobic001G510400--Sobic003G304100 Sobic003G409800 Sobic003G409800 Sobic001G510400--Sobic003G409800 Sobic001G510400--Sobic003G358200 Sobic001G510400--Sobic002G225300 Sobic005G061033--Sobic005G061000 Sobic001G237000 Sobic001G237000 Sobic005G061033--Sobic001G237000 Sobic005G061033--Sobic003G197300 Sobic006G119600 Sobic006G119600 Sobic005G061033--Sobic006G119600 Sobic004G256800 Sobic004G256800 Sobic005G061033--Sobic004G256800 Sobic005G061033--Sobic001G206300 Sobic001G502700 Sobic001G502700 Sobic005G061033--Sobic001G502700 Sobic005G061033--Sobic002G225300 Sobic003G224200 Sobic003G224200 Sobic005G061033--Sobic003G224200 Sobic002G185300--Sobic003G129400 Sobic002G185300--Sobic004G155200 Sobic002G185300--Sobic001G112000 Sobic004G353600 Sobic004G353600 Sobic002G185300--Sobic004G353600 Sobic009G201500 Sobic009G201500 Sobic002G185300--Sobic009G201500 Sobic007G216500 Sobic007G216500 Sobic002G185300--Sobic007G216500 Sobic002G185300--Sobic002G225300 Sobic003G033700 Sobic003G033700 Sobic002G185300--Sobic003G033700 Sobic002G185300--Sobic001G510400 Sobic003G289900--Sobic002G225300 Sobic009G153000 Sobic009G153000 Sobic003G289900--Sobic009G153000 Sobic003G033000 Sobic003G033000 Sobic003G289900--Sobic003G033000 Sobic003G289900--Sobic004G353600 Sobic009G179600 Sobic009G179600 Sobic003G289900--Sobic009G179600 Sobic003G289900--Sobic003G332000 Sobic009G118600 Sobic009G118600 Sobic003G289900--Sobic009G118600 Sobic003G289900--Sobic003G197300 Sobic004G039300 Sobic004G039300 Sobic003G289900--Sobic004G039300 Sobic005G061000--Sobic005G061033 Sobic002G037400 Sobic002G037400 Sobic005G061000--Sobic002G037400 Sobic007G143100 Sobic007G143100 Sobic005G061000--Sobic007G143100 Sobic001G155300 Sobic001G155300 Sobic005G061000--Sobic001G155300 Sobic005G016900 Sobic005G016900 Sobic005G061000--Sobic005G016900 Sobic003G397400 Sobic003G397400 Sobic005G061000--Sobic003G397400 Sobic007G169600 Sobic007G169600 Sobic005G061000--Sobic007G169600 Sobic007G143200 Sobic007G143200 Sobic005G061000--Sobic007G143200 Sobic002G325600 Sobic002G325600 Sobic005G061000--Sobic002G325600 Sobic003G281600--Sobic005G110421 Sobic003G281600--Sobic006G119600 Sobic010G114300 Sobic010G114300 Sobic003G281600--Sobic010G114300 Sobic003G281600--Sobic005G061000 Sobic006G081200 Sobic006G081200 Sobic003G281600--Sobic006G081200 Sobic003G281600--Sobic003G197300 Sobic003G281600--Sobic003G224200 Sobic001G418600 Sobic001G418600 Sobic003G281600--Sobic001G418600 Sobic010G253500 Sobic010G253500 Sobic003G281600--Sobic010G253500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.