Gene annotation
Transcriptome id Sobic.002G134400.1
Synonym URH1, Sb02g011950
Functional annotation inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
UniProt C5X5X9
Pfam PF01156
Panther DB PTHR12304 PTHR12304:SF21
NCBI CDD KOG2938; Predicted inosine-uridine preferring nucleoside hydrolase
KEGG Orthology K01240; uridine nucleosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36310 : uridine-ribohydrolase 1
RAP-DB (Rice) LOC_Os09g39440.2 : inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005610 , Zm00025a013494 , Zm00025a030562
Brachypodium -
Barley HORVU7Hr1G059050.9 , HORVU7Hr1G059050.2 , HORVU7Hr1G059050.3 , HORVU7Hr1G059050.4 , HORVU7Hr1G059050.5 , HORVU7Hr1G059050.6
Wheat TraesCS7D02G278400 , TraesCS7A02G278600 , TraesCS7A02G278600 , TraesCS7B02G176500 , TraesCS7B02G176500 , TraesCS7B02G176500 , TraesCS7B02G176500
Populus -


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cDNA sequences
Sobic.002G134400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
2 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
3 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
4 Sobic.002G261900 arabinogalactan protein, putative, expressed -
5 Sobic.002G083266 - K00326: cytochrome-b5 reductase
6 Sobic.004G083000 CRAL/TRIO domain containing protein, expressed -
7 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
8 Sobic.001G289400 expressed protein -
9 Sobic.007G006700 polygalacturonase, putative, expressed -
10 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
11 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
12 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
13 Sobic.001G415000 expressed protein -
14 Sobic.001G058100 thioredoxin, putative, expressed -
15 Sobic.009G077400 mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
16 Sobic.001G398950 - -
17 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
18 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
19 Sobic.009G023801 - -
20 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase


Gene co-expression network
sample Sobic002G134400 Sobic002G134400 Sobic001G311100 Sobic001G311100 Sobic002G134400--Sobic001G311100 Sobic001G085900 Sobic001G085900 Sobic002G134400--Sobic001G085900 Sobic010G094600 Sobic010G094600 Sobic002G134400--Sobic010G094600 Sobic002G261900 Sobic002G261900 Sobic002G134400--Sobic002G261900 Sobic002G083266 Sobic002G083266 Sobic002G134400--Sobic002G083266 Sobic004G083000 Sobic004G083000 Sobic002G134400--Sobic004G083000 Sobic001G298300 Sobic001G298300 Sobic002G134400--Sobic001G298300 Sobic001G289400 Sobic001G289400 Sobic002G134400--Sobic001G289400 Sobic007G006700 Sobic007G006700 Sobic002G134400--Sobic007G006700 Sobic001G311100--Sobic002G261900 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic003G043400 Sobic003G043400 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic010G017000 Sobic010G017000 Sobic001G311100--Sobic010G017000 Sobic001G311100--Sobic002G083266 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G158500 Sobic001G158500 Sobic001G085900--Sobic001G158500 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G085900--Sobic001G298300 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900 Sobic010G094600--Sobic001G311100 Sobic010G094600--Sobic009G160200 Sobic003G052400 Sobic003G052400 Sobic010G094600--Sobic003G052400 Sobic001G516100 Sobic001G516100 Sobic010G094600--Sobic001G516100 Sobic007G006600 Sobic007G006600 Sobic010G094600--Sobic007G006600 Sobic010G094600--Sobic001G283500 Sobic002G348600 Sobic002G348600 Sobic010G094600--Sobic002G348600 Sobic010G094600--Sobic002G261900 Sobic010G094600--Sobic002G083266 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic007G059900 Sobic007G059900 Sobic002G261900--Sobic007G059900 Sobic002G261900--Sobic002G083266 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic002G261900--Sobic003G043400 Sobic010G204300 Sobic010G204300 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic002G083266--Sobic006G062800 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800 Sobic008G058700 Sobic008G058700 Sobic004G083000--Sobic008G058700 Sobic003G189700 Sobic003G189700 Sobic004G083000--Sobic003G189700 Sobic004G083000--Sobic003G043400 Sobic004G083000--Sobic010G017000 Sobic004G083000--Sobic001G311100 Sobic004G083000--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic004G083000--Sobic006G217700 Sobic003G092700 Sobic003G092700 Sobic004G083000--Sobic003G092700 Sobic004G083000--Sobic002G134400 Sobic006G115466 Sobic006G115466 Sobic001G298300--Sobic006G115466 Sobic006G271200 Sobic006G271200 Sobic001G298300--Sobic006G271200 Sobic004G102400 Sobic004G102400 Sobic001G298300--Sobic004G102400 Sobic001G003000 Sobic001G003000 Sobic001G298300--Sobic001G003000 Sobic001G298300--Sobic001G085900 Sobic001G298300--Sobic010G129600 Sobic001G436900 Sobic001G436900 Sobic001G298300--Sobic001G436900 Sobic007G178100 Sobic007G178100 Sobic001G298300--Sobic007G178100 Sobic006G237900 Sobic006G237900 Sobic001G298300--Sobic006G237900 Sobic001G058100 Sobic001G058100 Sobic001G289400--Sobic001G058100 Sobic006G220900 Sobic006G220900 Sobic001G289400--Sobic006G220900 Sobic010G168200 Sobic010G168200 Sobic001G289400--Sobic010G168200 Sobic001G233532 Sobic001G233532 Sobic001G289400--Sobic001G233532 Sobic001G010700 Sobic001G010700 Sobic001G289400--Sobic001G010700 Sobic004G204800 Sobic004G204800 Sobic001G289400--Sobic004G204800 Sobic009G077400 Sobic009G077400 Sobic001G289400--Sobic009G077400 Sobic007G096700 Sobic007G096700 Sobic001G289400--Sobic007G096700 Sobic001G289400--Sobic003G043400 Sobic007G006700--Sobic001G085900 Sobic007G006700--Sobic002G083266 Sobic003G023000 Sobic003G023000 Sobic007G006700--Sobic003G023000 Sobic010G016400 Sobic010G016400 Sobic007G006700--Sobic010G016400 Sobic007G006700--Sobic009G111600 Sobic007G006700--Sobic001G058100 Sobic006G096400 Sobic006G096400 Sobic007G006700--Sobic006G096400 Sobic007G006700--Sobic010G188100 Sobic007G006700--Sobic001G224400
Octagon: transcription factors


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