Gene annotation
Transcriptome id Sobic.001G298300.2,Sobic.001G298300.1
Synonym Sb01g029070, ATG3, ATATG3
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
autophagy-related protein 3, putative, expressed
UniProt A0A1B6QLX0
Pfam PF10381 PF03987 PF03986
Panther DB PTHR12866 PTHR12866:SF2
NCBI CDD KOG2981; Protein involved in autophagocytosis during starvation
KEGG Orthology K08343; ubiquitin-like-conjugating enzyme ATG3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61500 : autophagy 3 (APG3)
RAP-DB (Rice) LOC_Os01g10290.1,LOC_Os01g10290.2 : autophagy-related protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a002688 , Zm00025a051966 , Zm00025a048558
Brachypodium KQJ97797
Barley HORVU1Hr1G056110.2 , HORVU1Hr1G056110.3 , HORVU1Hr1G056110.1 , HORVU1Hr1G056110.4
Wheat TraesCS1B02G233500 , TraesCS1B02G233500 , TraesCS1B02G233500 , TraesCS1D02G221700 , TraesCS1A02G220200 , TraesCS1A02G220200 , TraesCS1D02G221700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G298300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G115466 - -
2 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
3 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
4 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
5 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
6 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
7 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
8 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
9 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
10 Sobic.008G061100 expressed protein -
11 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
12 Sobic.006G114800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
13 Sobic.001G398950 - -
14 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
15 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
16 Sobic.002G134400 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
17 Sobic.004G349800 expressed protein -
18 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
19 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
20 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -


Gene co-expression network
sample Sobic001G298300 Sobic001G298300 Sobic006G115466 Sobic006G115466 Sobic001G298300--Sobic006G115466 Sobic006G271200 Sobic006G271200 Sobic001G298300--Sobic006G271200 Sobic004G102400 Sobic004G102400 Sobic001G298300--Sobic004G102400 Sobic001G003000 Sobic001G003000 Sobic001G298300--Sobic001G003000 Sobic001G085900 Sobic001G085900 Sobic001G298300--Sobic001G085900 Sobic010G129600 Sobic010G129600 Sobic001G298300--Sobic010G129600 Sobic001G436900 Sobic001G436900 Sobic001G298300--Sobic001G436900 Sobic007G178100 Sobic007G178100 Sobic001G298300--Sobic007G178100 Sobic006G237900 Sobic006G237900 Sobic001G298300--Sobic006G237900 Sobic006G115466--Sobic001G298300 Sobic002G314900 Sobic002G314900 Sobic006G115466--Sobic002G314900 Sobic007G028100 Sobic007G028100 Sobic006G115466--Sobic007G028100 Sobic001G279100 Sobic001G279100 Sobic006G115466--Sobic001G279100 Sobic006G115466--Sobic010G129600 Sobic006G115466--Sobic001G436900 Sobic008G061100 Sobic008G061100 Sobic006G115466--Sobic008G061100 Sobic004G349800 Sobic004G349800 Sobic006G115466--Sobic004G349800 Sobic006G004500 Sobic006G004500 Sobic006G115466--Sobic006G004500 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic001G003000--Sobic009G126900 Sobic001G003000--Sobic004G102400 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G085900--Sobic001G158500 Sobic002G083266 Sobic002G083266 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic001G085900--Sobic010G129600 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900 Sobic001G005600 Sobic001G005600 Sobic010G129600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic010G129600--Sobic001G161900 Sobic010G129600--Sobic001G313500 Sobic010G129600--Sobic006G271200 Sobic004G091200 Sobic004G091200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic009G160600 Sobic009G160600 Sobic010G129600--Sobic009G160600 Sobic010G129600--Sobic006G237900 Sobic010G129600--Sobic008G061100 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic002G382600 Sobic002G382600 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic009G208500 Sobic009G208500 Sobic007G178100--Sobic009G208500 Sobic001G251900 Sobic001G251900 Sobic007G178100--Sobic001G251900 Sobic001G417600 Sobic001G417600 Sobic007G178100--Sobic001G417600 Sobic007G178100--Sobic001G298300 Sobic009G038501 Sobic009G038501 Sobic007G178100--Sobic009G038501 Sobic004G236600 Sobic004G236600 Sobic007G178100--Sobic004G236600 Sobic001G151800 Sobic001G151800 Sobic007G178100--Sobic001G151800 Sobic004G246200 Sobic004G246200 Sobic007G178100--Sobic004G246200 Sobic009G004200 Sobic009G004200 Sobic007G178100--Sobic009G004200 Sobic006G237900--Sobic006G271200 Sobic006G237900--Sobic004G351300 Sobic006G237900--Sobic001G003000 Sobic005G059600 Sobic005G059600 Sobic006G237900--Sobic005G059600 Sobic006G237900--Sobic010G129600 Sobic006G237900--Sobic010G130200 Sobic006G237900--Sobic010G043400 Sobic006G237900--Sobic001G089800 Sobic006G237900--Sobic001G436900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.