Gene annotation
Transcriptome id Sobic.001G003000.1
Synonym Sb01g000370
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OTU-like cysteine protease family protein, putative, expressed
UniProt C5WRV4
Pfam PF02338
Panther DB PTHR12419 PTHR12419:SF18
NCBI CDD KOG2605; OTU (ovarian tumor)-like cysteine protease
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04250 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os03g64219.1 : OTU-like cysteine protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a016281
Brachypodium KQK11975
Barley -
Wheat TraesCS5D02G550400 , TraesCS5D02G550400 , TraesCS5B02G564100 , TraesCS4A02G315200 , TraesCS4A02G315200
Populus -


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cDNA sequences
Sobic.001G003000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
2 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
3 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
4 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
5 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
6 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
7 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G193700 transmembrane protein 56, putative, expressed -
9 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
10 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
11 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
13 Sobic.001G440600 expressed protein -
14 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
15 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
16 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
18 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
19 Sobic.002G009700 AMP-binding domain containing protein, expressed -
20 Sobic.004G351300 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G003000 Sobic001G003000 Sobic006G271200 Sobic006G271200 Sobic001G003000--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic001G003000--Sobic001G089800 Sobic009G126900 Sobic009G126900 Sobic001G003000--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic001G003000--Sobic004G102400 Sobic006G237900 Sobic006G237900 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic010G043400 Sobic010G043400 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic001G089800--Sobic001G003000 Sobic004G341200 Sobic004G341200 Sobic001G089800--Sobic004G341200 Sobic001G089800--Sobic009G193700 Sobic001G089800--Sobic006G271200 Sobic009G167700 Sobic009G167700 Sobic001G089800--Sobic009G167700 Sobic002G244100 Sobic002G244100 Sobic001G089800--Sobic002G244100 Sobic001G089800--Sobic004G102400 Sobic010G064600 Sobic010G064600 Sobic001G089800--Sobic010G064600 Sobic003G354400 Sobic003G354400 Sobic001G089800--Sobic003G354400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic006G237900--Sobic006G271200 Sobic006G237900--Sobic004G351300 Sobic006G237900--Sobic001G003000 Sobic005G059600 Sobic005G059600 Sobic006G237900--Sobic005G059600 Sobic010G129600 Sobic010G129600 Sobic006G237900--Sobic010G129600 Sobic006G237900--Sobic010G130200 Sobic006G237900--Sobic010G043400 Sobic006G237900--Sobic001G089800 Sobic006G237900--Sobic001G436900 Sobic003G005600--Sobic009G126900 Sobic002G304000 Sobic002G304000 Sobic003G005600--Sobic002G304000 Sobic003G005600--Sobic001G003000 Sobic003G005600--Sobic003G329400 Sobic003G005600--Sobic006G271200 Sobic003G005600--Sobic004G101900 Sobic008G062200 Sobic008G062200 Sobic003G005600--Sobic008G062200 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic009G193700--Sobic010G107000 Sobic009G193700--Sobic008G062200 Sobic009G211400 Sobic009G211400 Sobic009G193700--Sobic009G211400 Sobic009G193700--Sobic003G355600 Sobic009G029600 Sobic009G029600 Sobic009G193700--Sobic009G029600 Sobic004G260000 Sobic004G260000 Sobic009G193700--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic009G193700--Sobic003G219600 Sobic006G199000 Sobic006G199000 Sobic009G193700--Sobic006G199000 Sobic009G193700--Sobic001G089800 Sobic001G350700--Sobic001G003000 Sobic001G217400 Sobic001G217400 Sobic001G350700--Sobic001G217400 Sobic006G090500 Sobic006G090500 Sobic001G350700--Sobic006G090500 Sobic001G350700--Sobic006G271200 Sobic006G214200 Sobic006G214200 Sobic001G350700--Sobic006G214200 Sobic001G305500 Sobic001G305500 Sobic001G350700--Sobic001G305500 Sobic001G440600 Sobic001G440600 Sobic001G350700--Sobic001G440600 Sobic003G228100 Sobic003G228100 Sobic001G350700--Sobic003G228100 Sobic001G350700--Sobic004G341200
Octagon: transcription factors


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