Gene annotation
Transcriptome id Sobic.001G488500.4
Synonym Sb01g045700,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
"OsFBK12(Ortholog in rice:Chen et al., 2013)" (PubMedID : 31659851)
OsFBK12 - F-box domain and kelch repeat containing protein, expressed
UniProt A0A1B6QQ89
Pfam PF01344
Panther DB PTHR24413 PTHR24413:SF133
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G14330 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os03g07530.3 : OsFBK12 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a053329 , Zm00025a000865
Brachypodium KQK23400
Barley HORVU4Hr1G075310.6 , HORVU4Hr1G075310.2 , HORVU4Hr1G075310.3 , HORVU4Hr1G075310.1 , HORVU4Hr1G075310.7 , HORVU4Hr1G075310.4 , HORVU4Hr1G075310.5
Wheat TraesCS7A02G004300 , TraesCS4D02G286700
Populus -


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cDNA sequences
Sobic.001G488500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
2 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
3 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
4 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
5 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
6 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
7 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
8 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
9 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
10 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
11 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
12 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
13 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
14 Sobic.003G138200 expressed protein -
15 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
16 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
17 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
18 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
20 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)


Gene co-expression network
sample Sobic001G488500 Sobic001G488500 Sobic004G236600 Sobic004G236600 Sobic001G488500--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic001G488500--Sobic005G152100 Sobic004G246200 Sobic004G246200 Sobic001G488500--Sobic004G246200 Sobic005G231900 Sobic005G231900 Sobic001G488500--Sobic005G231900 Sobic002G322900 Sobic002G322900 Sobic001G488500--Sobic002G322900 Sobic004G255000 Sobic004G255000 Sobic001G488500--Sobic004G255000 Sobic005G079900 Sobic005G079900 Sobic001G488500--Sobic005G079900 Sobic010G206000 Sobic010G206000 Sobic001G488500--Sobic010G206000 Sobic005G215900 Sobic005G215900 Sobic001G488500--Sobic005G215900 Sobic004G236600--Sobic001G488500 Sobic004G236600--Sobic005G152100 Sobic004G236600--Sobic002G322900 Sobic004G236600--Sobic004G255000 Sobic004G236600--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic004G236600--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic004G236600--Sobic008G024400 Sobic004G236600--Sobic005G215900 Sobic009G038501 Sobic009G038501 Sobic004G236600--Sobic009G038501 Sobic005G152100--Sobic004G246200 Sobic005G152100--Sobic004G236600 Sobic005G018500 Sobic005G018500 Sobic005G152100--Sobic005G018500 Sobic005G152100--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic005G152100--Sobic001G249300 Sobic003G259200 Sobic003G259200 Sobic005G152100--Sobic003G259200 Sobic005G152100--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic005G152100--Sobic009G054500 Sobic005G152100--Sobic001G412700 Sobic004G246200--Sobic005G152100 Sobic004G246200--Sobic005G018500 Sobic004G246200--Sobic003G259200 Sobic004G246200--Sobic004G255000 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic004G246200--Sobic002G322900 Sobic004G246200--Sobic009G054500 Sobic004G246200--Sobic008G024400 Sobic004G162400 Sobic004G162400 Sobic005G231900--Sobic004G162400 Sobic005G231900--Sobic001G488500 Sobic005G231900--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic005G231900--Sobic004G236600 Sobic002G304000 Sobic002G304000 Sobic005G231900--Sobic002G304000 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic002G322900--Sobic004G236600 Sobic002G322900--Sobic005G152100 Sobic002G322900--Sobic004G246200 Sobic001G512800 Sobic001G512800 Sobic002G322900--Sobic001G512800 Sobic002G322900--Sobic001G412700 Sobic004G341200 Sobic004G341200 Sobic002G322900--Sobic004G341200 Sobic002G322900--Sobic004G255000 Sobic002G322900--Sobic001G488500 Sobic002G322900--Sobic010G206000 Sobic009G029600 Sobic009G029600 Sobic004G255000--Sobic009G029600 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic001G280200 Sobic001G280200 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G255000--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic004G255000--Sobic003G219600 Sobic004G255000--Sobic005G152100 Sobic005G079900--Sobic004G101900 Sobic009G234800 Sobic009G234800 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200 Sobic010G206000--Sobic001G512800 Sobic010G206000--Sobic004G246200 Sobic010G206000--Sobic001G488500 Sobic010G206000--Sobic002G322900 Sobic001G305800 Sobic001G305800 Sobic010G206000--Sobic001G305800 Sobic002G155400 Sobic002G155400 Sobic010G206000--Sobic002G155400 Sobic010G206000--Sobic001G412700 Sobic010G206000--Sobic004G255000 Sobic010G206000--Sobic005G018500 Sobic005G215900--Sobic005G152100 Sobic005G215900--Sobic004G236600 Sobic002G381300 Sobic002G381300 Sobic005G215900--Sobic002G381300 Sobic005G215900--Sobic005G216000 Sobic005G215900--Sobic001G488500 Sobic005G215900--Sobic008G024400 Sobic005G215900--Sobic002G304000 Sobic003G149200 Sobic003G149200 Sobic005G215900--Sobic003G149200 Sobic005G215900--Sobic001G249300
Octagon: transcription factors


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