Gene annotation
Transcriptome id Sobic.004G246200.1
Synonym PYD1, Sb04g028610
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
dihydroorotate dihydrogenase protein, putative, expressed
UniProt C5XZ92
Pfam PF01180
Panther DB PTHR11938 PTHR11938:SF87
NCBI CDD -
KEGG Orthology K00207; dihydropyrimidine dehydrogenase (NADP+)
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G17810 : pyrimidine 1
RAP-DB (Rice) LOC_Os02g50350.1 : dihydroorotate dihydrogenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a021962
Brachypodium KQK02018
Barley HORVU6Hr1G074200.1 , HORVU6Hr1G074200.2
Wheat TraesCS6D02G278900 , TraesCS6B02G328700 , TraesCS6A02G299200
Populus -


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cDNA sequences
Sobic.004G246200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
2 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
3 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
4 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
5 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
8 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
9 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -
10 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
11 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
13 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
14 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
15 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
16 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
17 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
18 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
19 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
20 Sobic.003G269700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G246200 Sobic004G246200 Sobic005G152100 Sobic005G152100 Sobic004G246200--Sobic005G152100 Sobic005G018500 Sobic005G018500 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G255000 Sobic004G255000 Sobic004G246200--Sobic004G255000 Sobic001G412700 Sobic001G412700 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic002G322900 Sobic002G322900 Sobic004G246200--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic004G246200--Sobic009G054500 Sobic008G024400 Sobic008G024400 Sobic004G246200--Sobic008G024400 Sobic005G152100--Sobic004G246200 Sobic004G236600 Sobic004G236600 Sobic005G152100--Sobic004G236600 Sobic005G152100--Sobic005G018500 Sobic005G152100--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic005G152100--Sobic001G249300 Sobic005G152100--Sobic003G259200 Sobic005G152100--Sobic002G322900 Sobic005G152100--Sobic009G054500 Sobic005G152100--Sobic001G412700 Sobic005G018500--Sobic009G054500 Sobic005G018500--Sobic004G260000 Sobic005G018500--Sobic004G255000 Sobic005G018500--Sobic003G259200 Sobic009G226300 Sobic009G226300 Sobic005G018500--Sobic009G226300 Sobic005G018500--Sobic001G249300 Sobic003G148800 Sobic003G148800 Sobic005G018500--Sobic003G148800 Sobic003G219600 Sobic003G219600 Sobic005G018500--Sobic003G219600 Sobic007G187300 Sobic007G187300 Sobic005G018500--Sobic007G187300 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic009G029600 Sobic009G029600 Sobic003G259200--Sobic009G029600 Sobic005G151700 Sobic005G151700 Sobic003G259200--Sobic005G151700 Sobic003G259200--Sobic007G187300 Sobic004G255000--Sobic009G029600 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic001G280200 Sobic001G280200 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G255000--Sobic004G260000 Sobic004G255000--Sobic003G219600 Sobic004G255000--Sobic005G152100 Sobic001G412700--Sobic004G255000 Sobic001G412700--Sobic003G259200 Sobic001G412700--Sobic005G152100 Sobic003G269700 Sobic003G269700 Sobic001G412700--Sobic003G269700 Sobic001G412700--Sobic004G246200 Sobic001G212000 Sobic001G212000 Sobic001G412700--Sobic001G212000 Sobic001G412700--Sobic009G029600 Sobic001G412700--Sobic002G322900 Sobic001G412700--Sobic005G018500 Sobic004G260000--Sobic005G018500 Sobic004G260000--Sobic009G054500 Sobic004G260000--Sobic009G226300 Sobic004G260000--Sobic004G255000 Sobic004G260000--Sobic001G249300 Sobic008G062200 Sobic008G062200 Sobic004G260000--Sobic008G062200 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic004G260000--Sobic009G211400 Sobic002G322900--Sobic004G236600 Sobic002G322900--Sobic005G152100 Sobic002G322900--Sobic004G246200 Sobic001G512800 Sobic001G512800 Sobic002G322900--Sobic001G512800 Sobic002G322900--Sobic001G412700 Sobic004G341200 Sobic004G341200 Sobic002G322900--Sobic004G341200 Sobic002G322900--Sobic004G255000 Sobic001G488500 Sobic001G488500 Sobic002G322900--Sobic001G488500 Sobic010G206000 Sobic010G206000 Sobic002G322900--Sobic010G206000 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic009G054500--Sobic003G148800 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic006G100332 Sobic006G100332 Sobic009G054500--Sobic006G100332 Sobic002G215700 Sobic002G215700 Sobic009G054500--Sobic002G215700 Sobic008G024400--Sobic005G152100 Sobic008G024400--Sobic004G246200 Sobic008G024400--Sobic001G412700 Sobic008G024400--Sobic004G255000 Sobic008G024400--Sobic004G236600 Sobic008G024400--Sobic001G249300 Sobic008G024400--Sobic001G280200 Sobic008G024400--Sobic001G212000 Sobic005G215900 Sobic005G215900 Sobic008G024400--Sobic005G215900
Octagon: transcription factors


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