Gene annotation
Transcriptome id Sobic.001G512800.1
Synonym ACO3, Sb01g047850
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aconitate hydratase protein, putative, expressed
UniProt Q1KSB0 , Q1HN97 , Q1HN93
Pfam PF00694 PF00330
Panther DB PTHR11670 PTHR11670:SF40
NCBI CDD -
KEGG Orthology K01681; ACO, aconitate hydratase
Gene Ontology GO:0008152; metabolic process


Orthologs (automatic annotation)
TAIR AT2G05710 : aconitase 3
RAP-DB (Rice) LOC_Os03g04410.1 : aconitate hydratase protein, putative, expressed
MaizeGDB (Corn) Zm00025a053380 , Zm00025a000503 , Zm00025a029963
Brachypodium KQK23766
Barley HORVU7Hr1G045470.9 , HORVU7Hr1G045470.16 , HORVU7Hr1G045470.14 , HORVU7Hr1G045470.13 , HORVU7Hr1G045470.12 , HORVU7Hr1G045470.11 , HORVU7Hr1G045470.30 , HORVU7Hr1G045470.21 , HORVU7Hr1G045470.26 , HORVU7Hr1G045470.27 , HORVU7Hr1G045470.24 , HORVU7Hr1G045470.25 , HORVU7Hr1G045470.22 , HORVU7Hr1G045470.28 , HORVU7Hr1G045470.29 , HORVU4Hr1G080640.1 , HORVU4Hr1G080640.2 , HORVU4Hr1G080640.3 , HORVU4Hr1G080640.4 , HORVU4Hr1G080640.5 , HORVU4Hr1G080640.6 , HORVU4Hr1G080640.7 , HORVU4Hr1G080640.8 , HORVU4Hr1G080640.9 , HORVU7Hr1G045470.17 , HORVU7Hr1G045470.4 , HORVU7Hr1G045470.3 , HORVU7Hr1G045470.2 , HORVU4Hr1G080640.12 , HORVU4Hr1G080640.10 , HORVU4Hr1G080640.11
Wheat TraesCS7A02G219100 , TraesCS5A02G505000 , TraesCS5A02G505000 , TraesCS7D02G223000 , TraesCS7A02G219100 , TraesCS7D02G223000 , TraesCS4B02G335100
Populus -


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cDNA sequences
Sobic.001G512800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G138200 expressed protein -
2 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
3 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
4 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
5 Sobic.002G409500 lipase precursor, putative, expressed -
6 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
7 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
8 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
9 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
10 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
11 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
12 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
13 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
14 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
15 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
16 Sobic.006G030700 receptor kinase, putative, expressed -
17 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
18 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
19 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G512800 Sobic001G512800 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic001G249300 Sobic001G249300 Sobic003G138200--Sobic001G249300 Sobic009G226300 Sobic009G226300 Sobic003G138200--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic003G138200--Sobic007G187300 Sobic001G150200 Sobic001G150200 Sobic003G138200--Sobic001G150200 Sobic003G138200--Sobic009G054500 Sobic009G211400 Sobic009G211400 Sobic003G138200--Sobic009G211400 Sobic002G215700 Sobic002G215700 Sobic003G138200--Sobic002G215700 Sobic004G260000 Sobic004G260000 Sobic003G138200--Sobic004G260000 Sobic001G325200 Sobic001G325200 Sobic003G138200--Sobic001G325200 Sobic004G236600 Sobic004G236600 Sobic002G322900--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic002G322900--Sobic005G152100 Sobic002G322900--Sobic004G246200 Sobic002G322900--Sobic001G512800 Sobic001G412700 Sobic001G412700 Sobic002G322900--Sobic001G412700 Sobic004G341200 Sobic004G341200 Sobic002G322900--Sobic004G341200 Sobic004G255000 Sobic004G255000 Sobic002G322900--Sobic004G255000 Sobic001G488500 Sobic001G488500 Sobic002G322900--Sobic001G488500 Sobic002G322900--Sobic010G206000 Sobic010G206000--Sobic001G512800 Sobic010G206000--Sobic004G246200 Sobic010G206000--Sobic001G488500 Sobic010G206000--Sobic002G322900 Sobic001G305800 Sobic001G305800 Sobic010G206000--Sobic001G305800 Sobic002G155400 Sobic002G155400 Sobic010G206000--Sobic002G155400 Sobic010G206000--Sobic001G412700 Sobic010G206000--Sobic004G255000 Sobic005G018500 Sobic005G018500 Sobic010G206000--Sobic005G018500 Sobic004G246200--Sobic005G152100 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G246200--Sobic004G255000 Sobic004G246200--Sobic001G412700 Sobic004G246200--Sobic004G260000 Sobic004G246200--Sobic002G322900 Sobic004G246200--Sobic009G054500 Sobic008G024400 Sobic008G024400 Sobic004G246200--Sobic008G024400 Sobic002G409500--Sobic009G029600 Sobic003G219600 Sobic003G219600 Sobic002G409500--Sobic003G219600 Sobic002G409500--Sobic009G211400 Sobic001G280200 Sobic001G280200 Sobic002G409500--Sobic001G280200 Sobic002G409500--Sobic001G249300 Sobic003G257100 Sobic003G257100 Sobic002G409500--Sobic003G257100 Sobic002G409500--Sobic004G255000 Sobic002G215800 Sobic002G215800 Sobic002G409500--Sobic002G215800 Sobic002G409500--Sobic003G259200 Sobic009G029600--Sobic004G255000 Sobic009G029600--Sobic001G280200 Sobic009G029600--Sobic003G219600 Sobic009G029600--Sobic001G249300 Sobic009G029600--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic009G029600--Sobic006G030700 Sobic009G029600--Sobic009G054500 Sobic009G029600--Sobic002G215800 Sobic009G029600--Sobic009G226300 Sobic010G248900--Sobic001G249300 Sobic010G248900--Sobic006G030700 Sobic010G248900--Sobic001G512800 Sobic010G248900--Sobic005G018500 Sobic010G248900--Sobic009G054500 Sobic010G248900--Sobic003G259200 Sobic010G248900--Sobic001G280200 Sobic010G248900--Sobic009G226300 Sobic006G100332 Sobic006G100332 Sobic010G248900--Sobic006G100332 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic003G148800 Sobic003G148800 Sobic009G054500--Sobic003G148800 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic009G054500--Sobic006G100332 Sobic009G054500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic005G079900--Sobic004G101900 Sobic009G234800 Sobic009G234800 Sobic005G079900--Sobic009G234800 Sobic005G231900 Sobic005G231900 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200
Octagon: transcription factors


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