Gene annotation
Transcriptome id Sobic.010G248900.2,Sobic.010G248900.1
Synonym Sb10g028720, RPS3, RPM1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
disease resistance protein RPM1, putative, expressed
UniProt A0A194YLC8
Pfam PF13855 PF00931
Panther DB PTHR23155 PTHR23155:SF540
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology K13457; RPM1, disease resistance protein RPM1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os06g48520.1 : disease resistance protein RPM1, putative, expressed
MaizeGDB (Corn) Zm00025a018343 , Zm00025a018341
Brachypodium -
Barley -
Wheat TraesCS7D02G416200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
2 Sobic.006G030700 receptor kinase, putative, expressed -
3 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
4 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
5 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
6 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
7 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
8 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.006G100332 - -
10 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
11 Sobic.002G409500 lipase precursor, putative, expressed -
12 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
13 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
14 Sobic.002G100700 expressed protein -
15 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
16 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G138200 expressed protein -
18 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
19 Sobic.003G087200 nuclease PA3, putative, expressed -
20 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase


Gene co-expression network
sample Sobic010G248900 Sobic010G248900 Sobic001G249300 Sobic001G249300 Sobic010G248900--Sobic001G249300 Sobic006G030700 Sobic006G030700 Sobic010G248900--Sobic006G030700 Sobic001G512800 Sobic001G512800 Sobic010G248900--Sobic001G512800 Sobic005G018500 Sobic005G018500 Sobic010G248900--Sobic005G018500 Sobic009G054500 Sobic009G054500 Sobic010G248900--Sobic009G054500 Sobic003G259200 Sobic003G259200 Sobic010G248900--Sobic003G259200 Sobic001G280200 Sobic001G280200 Sobic010G248900--Sobic001G280200 Sobic009G226300 Sobic009G226300 Sobic010G248900--Sobic009G226300 Sobic006G100332 Sobic006G100332 Sobic010G248900--Sobic006G100332 Sobic001G249300--Sobic001G280200 Sobic001G249300--Sobic009G226300 Sobic001G249300--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G249300--Sobic007G187300 Sobic003G138200 Sobic003G138200 Sobic001G249300--Sobic003G138200 Sobic001G249300--Sobic006G030700 Sobic004G255000 Sobic004G255000 Sobic001G249300--Sobic004G255000 Sobic001G249300--Sobic003G259200 Sobic009G029600 Sobic009G029600 Sobic001G249300--Sobic009G029600 Sobic006G030700--Sobic007G187300 Sobic006G030700--Sobic009G226300 Sobic006G030700--Sobic001G249300 Sobic001G150600 Sobic001G150600 Sobic006G030700--Sobic001G150600 Sobic006G030700--Sobic001G280200 Sobic006G030700--Sobic009G054500 Sobic006G030700--Sobic006G100332 Sobic006G030700--Sobic009G029600 Sobic003G087200 Sobic003G087200 Sobic006G030700--Sobic003G087200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic001G512800--Sobic009G029600 Sobic001G512800--Sobic010G248900 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic005G018500--Sobic009G054500 Sobic004G260000 Sobic004G260000 Sobic005G018500--Sobic004G260000 Sobic005G018500--Sobic004G255000 Sobic005G018500--Sobic003G259200 Sobic005G018500--Sobic009G226300 Sobic005G018500--Sobic001G249300 Sobic003G148800 Sobic003G148800 Sobic005G018500--Sobic003G148800 Sobic003G219600 Sobic003G219600 Sobic005G018500--Sobic003G219600 Sobic005G018500--Sobic007G187300 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic009G054500--Sobic003G148800 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic009G054500--Sobic006G100332 Sobic002G215700 Sobic002G215700 Sobic009G054500--Sobic002G215700 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic003G259200--Sobic009G029600 Sobic005G151700 Sobic005G151700 Sobic003G259200--Sobic005G151700 Sobic003G259200--Sobic007G187300 Sobic001G280200--Sobic001G249300 Sobic001G280200--Sobic009G029600 Sobic001G280200--Sobic006G030700 Sobic001G280200--Sobic004G255000 Sobic001G280200--Sobic009G226300 Sobic001G280200--Sobic007G187300 Sobic001G280200--Sobic009G054500 Sobic001G162700 Sobic001G162700 Sobic001G280200--Sobic001G162700 Sobic001G280200--Sobic001G150600 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic001G325200 Sobic001G325200 Sobic009G226300--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000 Sobic006G100332--Sobic001G150600 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic006G100332--Sobic009G054500 Sobic004G321800 Sobic004G321800 Sobic006G100332--Sobic004G321800 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800
Octagon: transcription factors


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