Gene annotation
Transcriptome id Sobic.003G219600.1
Synonym APG7, ATATG7, Sb03g027840, ATAPG7, ATG7
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
ThiF family domain containing protein, putative, expressed
UniProt C5XR11
Pfam PF00899 PF16420
Panther DB PTHR10953 PTHR10953:SF3
NCBI CDD -
KEGG Orthology K08337; ubiquitin-like modifier-activating enzyme ATG7
Gene Ontology GO:0008641; ubiquitin-like modifier activating enzyme activity GO:0006914autophagy GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT5G45900 : ThiF family protein
RAP-DB (Rice) LOC_Os01g42850.2 : ThiF family domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038500
Brachypodium KQK08719 , PNT72383
Barley HORVU3Hr1G054070.19 , HORVU3Hr1G054070.18 , HORVU3Hr1G054070.11 , HORVU3Hr1G054070.10 , HORVU3Hr1G054070.13 , HORVU3Hr1G054070.12 , HORVU3Hr1G054070.15 , HORVU3Hr1G054070.14 , HORVU3Hr1G054070.17 , HORVU3Hr1G054070.16 , HORVU3Hr1G054070.5 , HORVU3Hr1G054070.7 , HORVU3Hr1G054070.6 , HORVU3Hr1G054070.9 , HORVU3Hr1G054070.8 , HORVU3Hr1G054070.4 , HORVU3Hr1G054070.3 , HORVU3Hr1G054070.2 , HORVU3Hr1G054070.1 , HORVU3Hr1G054070.20 , HORVU3Hr1G054070.21 , HORVU3Hr1G054070.22
Wheat TraesCS3A02G220600 , TraesCS3A02G220600 , TraesCS3D02G231900 , TraesCS3D02G231900 , TraesCS3B02G250900 , TraesCS3B02G250900 , TraesCS2D02G300300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
2 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
3 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
4 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
5 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
6 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
7 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
8 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
11 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
12 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
13 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
14 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
15 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
16 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
17 Sobic.002G409500 lipase precursor, putative, expressed -
18 Sobic.003G138200 expressed protein -
19 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
20 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit


Gene co-expression network
sample Sobic003G219600 Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic003G219600--Sobic009G211400 Sobic009G029600 Sobic009G029600 Sobic003G219600--Sobic009G029600 Sobic003G259200 Sobic003G259200 Sobic003G219600--Sobic003G259200 Sobic009G054500 Sobic009G054500 Sobic003G219600--Sobic009G054500 Sobic005G018500 Sobic005G018500 Sobic003G219600--Sobic005G018500 Sobic004G255000 Sobic004G255000 Sobic003G219600--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic003G219600--Sobic001G249300 Sobic004G260000 Sobic004G260000 Sobic003G219600--Sobic004G260000 Sobic009G226300 Sobic009G226300 Sobic003G219600--Sobic009G226300 Sobic009G211400--Sobic003G219600 Sobic010G107000 Sobic010G107000 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic003G138200 Sobic003G138200 Sobic009G211400--Sobic003G138200 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G193700 Sobic009G193700 Sobic009G211400--Sobic009G193700 Sobic009G211400--Sobic005G018500 Sobic009G029600--Sobic004G255000 Sobic001G280200 Sobic001G280200 Sobic009G029600--Sobic001G280200 Sobic009G029600--Sobic003G219600 Sobic009G029600--Sobic001G249300 Sobic009G029600--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic009G029600--Sobic006G030700 Sobic009G029600--Sobic009G054500 Sobic009G029600--Sobic002G215800 Sobic009G029600--Sobic009G226300 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic003G259200--Sobic009G029600 Sobic005G151700 Sobic005G151700 Sobic003G259200--Sobic005G151700 Sobic007G187300 Sobic007G187300 Sobic003G259200--Sobic007G187300 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic003G148800 Sobic003G148800 Sobic009G054500--Sobic003G148800 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic006G100332 Sobic006G100332 Sobic009G054500--Sobic006G100332 Sobic002G215700 Sobic002G215700 Sobic009G054500--Sobic002G215700 Sobic005G018500--Sobic009G054500 Sobic005G018500--Sobic004G260000 Sobic005G018500--Sobic004G255000 Sobic005G018500--Sobic003G259200 Sobic005G018500--Sobic009G226300 Sobic005G018500--Sobic001G249300 Sobic005G018500--Sobic003G148800 Sobic005G018500--Sobic003G219600 Sobic005G018500--Sobic007G187300 Sobic004G255000--Sobic009G029600 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G255000--Sobic004G260000 Sobic004G255000--Sobic003G219600 Sobic005G152100 Sobic005G152100 Sobic004G255000--Sobic005G152100 Sobic001G249300--Sobic001G280200 Sobic001G249300--Sobic009G226300 Sobic001G249300--Sobic009G054500 Sobic001G249300--Sobic007G187300 Sobic001G249300--Sobic003G138200 Sobic001G249300--Sobic006G030700 Sobic001G249300--Sobic004G255000 Sobic001G249300--Sobic003G259200 Sobic001G249300--Sobic009G029600 Sobic004G260000--Sobic005G018500 Sobic004G260000--Sobic009G054500 Sobic004G260000--Sobic009G226300 Sobic004G260000--Sobic004G255000 Sobic004G260000--Sobic001G249300 Sobic008G062200 Sobic008G062200 Sobic004G260000--Sobic008G062200 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic004G260000--Sobic009G211400 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic001G325200 Sobic001G325200 Sobic009G226300--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000
Octagon: transcription factors


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