Gene annotation
Transcriptome id Sobic.001G251900.1
Synonym Sb01g022250
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
exonuclease, putative, expressed
UniProt A0A1B6QKW0
Pfam PF00929
Panther DB PTHR30231 PTHR30231:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07710 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os10g26730.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a017804
Brachypodium KQJ96559
Barley HORVU5Hr1G020430.1 , HORVU5Hr1G020430.2 , HORVU5Hr1G020430.3 , HORVU5Hr1G020430.4 , HORVU5Hr1G020430.5 , HORVU5Hr1G020430.6 , HORVU5Hr1G020430.7
Wheat TraesCS5B02G084100 , TraesCS5D02G090400 , TraesCS5A02G082200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
2 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
3 Sobic.004G006966 - -
4 Sobic.004G006966 - -
5 Sobic.004G006966 - -
6 Sobic.004G006966 - -
7 Sobic.004G006966 - -
8 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
10 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
11 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
12 Sobic.010G016800 - -
13 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
14 Sobic.009G061300 - -
15 Sobic.003G269700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed -
16 Sobic.003G374150 - -
17 Sobic.002G409500 lipase precursor, putative, expressed -
18 Sobic.009G197700 expressed protein -
19 Sobic.005G136800 only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
20 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G251900 Sobic001G251900 Sobic001G483500 Sobic001G483500 Sobic001G251900--Sobic001G483500 Sobic003G219600 Sobic003G219600 Sobic001G251900--Sobic003G219600 Sobic004G006966 Sobic004G006966 Sobic001G251900--Sobic004G006966 Sobic006G100400 Sobic006G100400 Sobic001G251900--Sobic006G100400 Sobic005G151700 Sobic005G151700 Sobic001G251900--Sobic005G151700 Sobic010G098100 Sobic010G098100 Sobic001G483500--Sobic010G098100 Sobic001G483500--Sobic005G151700 Sobic001G483500--Sobic004G006966 Sobic001G101400 Sobic001G101400 Sobic001G483500--Sobic001G101400 Sobic001G483500--Sobic001G251900 Sobic009G211400 Sobic009G211400 Sobic003G219600--Sobic009G211400 Sobic009G029600 Sobic009G029600 Sobic003G219600--Sobic009G029600 Sobic003G259200 Sobic003G259200 Sobic003G219600--Sobic003G259200 Sobic009G054500 Sobic009G054500 Sobic003G219600--Sobic009G054500 Sobic005G018500 Sobic005G018500 Sobic003G219600--Sobic005G018500 Sobic004G255000 Sobic004G255000 Sobic003G219600--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic003G219600--Sobic001G249300 Sobic004G260000 Sobic004G260000 Sobic003G219600--Sobic004G260000 Sobic009G226300 Sobic009G226300 Sobic003G219600--Sobic009G226300 Sobic004G006966--Sobic004G006966 Sobic003G374150 Sobic003G374150 Sobic004G006966--Sobic003G374150 Sobic005G136800 Sobic005G136800 Sobic004G006966--Sobic005G136800 Sobic010G016800 Sobic010G016800 Sobic004G006966--Sobic010G016800 Sobic004G006966--Sobic001G483500 Sobic002G182850 Sobic002G182850 Sobic004G006966--Sobic002G182850 Sobic003G269700 Sobic003G269700 Sobic006G100400--Sobic003G269700 Sobic006G100400--Sobic003G219600 Sobic006G100400--Sobic001G483500 Sobic006G100400--Sobic005G151700 Sobic006G100400--Sobic003G259200 Sobic006G100400--Sobic001G251900 Sobic006G100400--Sobic004G255000 Sobic002G409500 Sobic002G409500 Sobic006G100400--Sobic002G409500 Sobic006G100400--Sobic010G098100 Sobic005G151700--Sobic010G098100 Sobic005G151700--Sobic001G483500 Sobic007G187300 Sobic007G187300 Sobic005G151700--Sobic007G187300 Sobic005G151700--Sobic003G259200 Sobic005G151700--Sobic003G219600 Sobic005G151700--Sobic009G211400 Sobic005G151700--Sobic001G249300 Sobic005G151700--Sobic005G018500 Sobic005G151700--Sobic009G029600
Octagon: transcription factors


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