Gene annotation
Transcriptome id Sobic.003G269700.1
Synonym Sb03g032230,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
SAM dependent carboxyl methyltransferase, putative, expressed
UniProt C5XHK5
Pfam PF03492
Panther DB PTHR31009 PTHR31009:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G36470 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os01g50610.1 : SAM dependent carboxyl methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a023284 , Zm00025a027893
Brachypodium KQK09322 , KQK09360
Barley HORVU3Hr1G065790.8 , HORVU3Hr1G065790.9 , HORVU3Hr1G065790.1 , HORVU3Hr1G065790.2 , HORVU3Hr1G065790.3 , HORVU3Hr1G065790.4 , HORVU3Hr1G065790.5 , HORVU3Hr1G065790.6 , HORVU3Hr1G065790.7
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
2 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
4 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
5 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
6 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
7 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.010G170550 - -
9 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
10 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
11 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
12 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
13 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
14 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
15 Sobic.002G409500 lipase precursor, putative, expressed -
16 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
17 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
19 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
20 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -


Gene co-expression network
sample Sobic003G269700 Sobic003G269700 Sobic004G255000 Sobic004G255000 Sobic003G269700--Sobic004G255000 Sobic001G412700 Sobic001G412700 Sobic003G269700--Sobic001G412700 Sobic009G029600 Sobic009G029600 Sobic003G269700--Sobic009G029600 Sobic001G483500 Sobic001G483500 Sobic003G269700--Sobic001G483500 Sobic003G219600 Sobic003G219600 Sobic003G269700--Sobic003G219600 Sobic005G151700 Sobic005G151700 Sobic003G269700--Sobic005G151700 Sobic006G100400 Sobic006G100400 Sobic003G269700--Sobic006G100400 Sobic010G170550 Sobic010G170550 Sobic003G269700--Sobic010G170550 Sobic003G259200 Sobic003G259200 Sobic003G269700--Sobic003G259200 Sobic004G255000--Sobic009G029600 Sobic005G018500 Sobic005G018500 Sobic004G255000--Sobic005G018500 Sobic001G249300 Sobic001G249300 Sobic004G255000--Sobic001G249300 Sobic009G054500 Sobic009G054500 Sobic004G255000--Sobic009G054500 Sobic001G280200 Sobic001G280200 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G260000 Sobic004G260000 Sobic004G255000--Sobic004G260000 Sobic004G255000--Sobic003G219600 Sobic005G152100 Sobic005G152100 Sobic004G255000--Sobic005G152100 Sobic001G412700--Sobic004G255000 Sobic001G412700--Sobic003G259200 Sobic001G412700--Sobic005G152100 Sobic001G412700--Sobic003G269700 Sobic004G246200 Sobic004G246200 Sobic001G412700--Sobic004G246200 Sobic001G212000 Sobic001G212000 Sobic001G412700--Sobic001G212000 Sobic001G412700--Sobic009G029600 Sobic002G322900 Sobic002G322900 Sobic001G412700--Sobic002G322900 Sobic001G412700--Sobic005G018500 Sobic009G029600--Sobic004G255000 Sobic009G029600--Sobic001G280200 Sobic009G029600--Sobic003G219600 Sobic009G029600--Sobic001G249300 Sobic009G211400 Sobic009G211400 Sobic009G029600--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic009G029600--Sobic006G030700 Sobic009G029600--Sobic009G054500 Sobic002G215800 Sobic002G215800 Sobic009G029600--Sobic002G215800 Sobic009G226300 Sobic009G226300 Sobic009G029600--Sobic009G226300 Sobic010G098100 Sobic010G098100 Sobic001G483500--Sobic010G098100 Sobic001G483500--Sobic005G151700 Sobic004G006966 Sobic004G006966 Sobic001G483500--Sobic004G006966 Sobic001G101400 Sobic001G101400 Sobic001G483500--Sobic001G101400 Sobic001G251900 Sobic001G251900 Sobic001G483500--Sobic001G251900 Sobic003G219600--Sobic009G211400 Sobic003G219600--Sobic009G029600 Sobic003G219600--Sobic003G259200 Sobic003G219600--Sobic009G054500 Sobic003G219600--Sobic005G018500 Sobic003G219600--Sobic004G255000 Sobic003G219600--Sobic001G249300 Sobic003G219600--Sobic004G260000 Sobic003G219600--Sobic009G226300 Sobic005G151700--Sobic010G098100 Sobic005G151700--Sobic001G483500 Sobic007G187300 Sobic007G187300 Sobic005G151700--Sobic007G187300 Sobic005G151700--Sobic003G259200 Sobic005G151700--Sobic003G219600 Sobic005G151700--Sobic009G211400 Sobic005G151700--Sobic001G249300 Sobic005G151700--Sobic005G018500 Sobic005G151700--Sobic009G029600 Sobic006G100400--Sobic003G269700 Sobic006G100400--Sobic003G219600 Sobic006G100400--Sobic001G483500 Sobic006G100400--Sobic005G151700 Sobic006G100400--Sobic003G259200 Sobic006G100400--Sobic001G251900 Sobic006G100400--Sobic004G255000 Sobic002G409500 Sobic002G409500 Sobic006G100400--Sobic002G409500 Sobic006G100400--Sobic010G098100 Sobic010G170550--Sobic003G269700 Sobic010G170550--Sobic009G029600 Sobic010G170550--Sobic004G255000 Sobic010G170550--Sobic003G219600 Sobic010G170550--Sobic001G483500 Sobic010G170550--Sobic005G151700 Sobic003G216000 Sobic003G216000 Sobic010G170550--Sobic003G216000 Sobic010G170550--Sobic006G100400 Sobic010G170550--Sobic001G251900 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic003G259200--Sobic009G029600 Sobic003G259200--Sobic005G151700 Sobic003G259200--Sobic007G187300
Octagon: transcription factors


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