Gene annotation
Transcriptome id Sobic.010G098100.1
Synonym XTH1, Sb10g008550
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
glycosyl hydrolases family 16, putative, expressed
UniProt C5Z7H6
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF43
NCBI CDD -
KEGG Orthology K08235; xyloglucan:xyloglucosyl transferase
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G13080 : xyloglucan endotransglucosylase/hydrolase 1
RAP-DB (Rice) LOC_Os06g13040.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a049422
Brachypodium KQK23201 , KQK23208
Barley HORVU2Hr1G101170.1 , HORVU7Hr1G039600.2
Wheat TraesCS6D02G318500 , TraesCS7D02G195900 , TraesCS3A02G093400 , TraesCS2A02G433800 , TraesCS7B02G099900 , TraesCS7A02G194300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
2 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
3 Sobic.001G212000 GEM, putative, expressed -
4 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
5 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
6 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
7 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
8 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G162700 "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed K01106: inositol-1,4,5-trisphosphate 5-phosphatase
10 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
11 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
12 Sobic.010G098000 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
13 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
14 Sobic.002G011600 NB-ARC domain containing protein, expressed -
15 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
16 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
17 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
18 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
19 Sobic.003G138200 expressed protein -
20 Sobic.005G018500 NAC domain transcription factor, putative, expressed -


Gene co-expression network
sample Sobic010G098100 Sobic010G098100 Sobic001G483500 Sobic001G483500 Sobic010G098100--Sobic001G483500 Sobic005G151700 Sobic005G151700 Sobic010G098100--Sobic005G151700 Sobic001G212000 Sobic001G212000 Sobic010G098100--Sobic001G212000 Sobic001G280200 Sobic001G280200 Sobic010G098100--Sobic001G280200 Sobic001G249300 Sobic001G249300 Sobic010G098100--Sobic001G249300 Sobic005G152100 Sobic005G152100 Sobic010G098100--Sobic005G152100 Sobic003G259200 Sobic003G259200 Sobic010G098100--Sobic003G259200 Sobic007G187300 Sobic007G187300 Sobic010G098100--Sobic007G187300 Sobic001G162700 Sobic001G162700 Sobic010G098100--Sobic001G162700 Sobic001G483500--Sobic010G098100 Sobic001G483500--Sobic005G151700 Sobic004G006966 Sobic004G006966 Sobic001G483500--Sobic004G006966 Sobic001G101400 Sobic001G101400 Sobic001G483500--Sobic001G101400 Sobic001G251900 Sobic001G251900 Sobic001G483500--Sobic001G251900 Sobic005G151700--Sobic010G098100 Sobic005G151700--Sobic001G483500 Sobic005G151700--Sobic007G187300 Sobic005G151700--Sobic003G259200 Sobic003G219600 Sobic003G219600 Sobic005G151700--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic005G151700--Sobic009G211400 Sobic005G151700--Sobic001G249300 Sobic005G018500 Sobic005G018500 Sobic005G151700--Sobic005G018500 Sobic009G029600 Sobic009G029600 Sobic005G151700--Sobic009G029600 Sobic001G212000--Sobic010G098100 Sobic003G085300 Sobic003G085300 Sobic001G212000--Sobic003G085300 Sobic001G212000--Sobic005G152100 Sobic001G212000--Sobic001G101400 Sobic001G212000--Sobic001G483500 Sobic001G412700 Sobic001G412700 Sobic001G212000--Sobic001G412700 Sobic001G212000--Sobic005G151700 Sobic008G024400 Sobic008G024400 Sobic001G212000--Sobic008G024400 Sobic004G236600 Sobic004G236600 Sobic001G212000--Sobic004G236600 Sobic001G280200--Sobic001G249300 Sobic001G280200--Sobic009G029600 Sobic006G030700 Sobic006G030700 Sobic001G280200--Sobic006G030700 Sobic004G255000 Sobic004G255000 Sobic001G280200--Sobic004G255000 Sobic009G226300 Sobic009G226300 Sobic001G280200--Sobic009G226300 Sobic001G280200--Sobic007G187300 Sobic009G054500 Sobic009G054500 Sobic001G280200--Sobic009G054500 Sobic001G280200--Sobic001G162700 Sobic001G150600 Sobic001G150600 Sobic001G280200--Sobic001G150600 Sobic001G249300--Sobic001G280200 Sobic001G249300--Sobic009G226300 Sobic001G249300--Sobic009G054500 Sobic001G249300--Sobic007G187300 Sobic003G138200 Sobic003G138200 Sobic001G249300--Sobic003G138200 Sobic001G249300--Sobic006G030700 Sobic001G249300--Sobic004G255000 Sobic001G249300--Sobic003G259200 Sobic001G249300--Sobic009G029600 Sobic004G246200 Sobic004G246200 Sobic005G152100--Sobic004G246200 Sobic005G152100--Sobic004G236600 Sobic005G152100--Sobic005G018500 Sobic005G152100--Sobic004G255000 Sobic005G152100--Sobic001G249300 Sobic005G152100--Sobic003G259200 Sobic002G322900 Sobic002G322900 Sobic005G152100--Sobic002G322900 Sobic005G152100--Sobic009G054500 Sobic005G152100--Sobic001G412700 Sobic003G259200--Sobic009G054500 Sobic003G259200--Sobic005G018500 Sobic003G259200--Sobic001G249300 Sobic003G259200--Sobic003G219600 Sobic003G259200--Sobic004G255000 Sobic003G259200--Sobic009G226300 Sobic003G259200--Sobic009G029600 Sobic003G259200--Sobic005G151700 Sobic003G259200--Sobic007G187300 Sobic007G187300--Sobic009G226300 Sobic007G187300--Sobic006G030700 Sobic007G187300--Sobic001G249300 Sobic007G187300--Sobic009G054500 Sobic007G187300--Sobic003G138200 Sobic006G100332 Sobic006G100332 Sobic007G187300--Sobic006G100332 Sobic007G187300--Sobic001G280200 Sobic007G187300--Sobic005G018500 Sobic004G260000 Sobic004G260000 Sobic007G187300--Sobic004G260000 Sobic001G162700--Sobic001G280200 Sobic001G162700--Sobic001G249300 Sobic001G162700--Sobic010G098100 Sobic001G162700--Sobic009G029600 Sobic001G162700--Sobic003G259200 Sobic001G162700--Sobic004G255000 Sobic001G162700--Sobic001G483500 Sobic001G162700--Sobic006G030700 Sobic001G162700--Sobic001G412700
Octagon: transcription factors


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