Gene annotation
Transcriptome id Sobic.001G212000.1
Synonym Sb01g018740
Functional annotation GEM, putative, expressed
UniProt C5WXH0
Pfam PF02893
Panther DB PTHR31969:SF14 PTHR31969
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23370 : GRAM domain-containing protein / ABA-responsive protein-related
RAP-DB (Rice) LOC_Os10g34730.1 : GEM, putative, expressed
MaizeGDB (Corn) Zm00025a040989 , Zm00025a047765 , Zm00025a017509 , Zm00025a013450
Brachypodium KQJ97212 , KQJ97211 , KQJ97210
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
2 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
3 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
4 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
5 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
6 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
8 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -
9 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
10 Sobic.001G162700 "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed K01106: inositol-1,4,5-trisphosphate 5-phosphatase
11 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
12 Sobic.007G003200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
13 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
14 Sobic.004G308000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@EF hand family protein, putative, expressed -
15 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
16 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
17 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
18 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
19 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
20 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G212000 Sobic001G212000 Sobic010G098100 Sobic010G098100 Sobic001G212000--Sobic010G098100 Sobic003G085300 Sobic003G085300 Sobic001G212000--Sobic003G085300 Sobic005G152100 Sobic005G152100 Sobic001G212000--Sobic005G152100 Sobic001G101400 Sobic001G101400 Sobic001G212000--Sobic001G101400 Sobic001G483500 Sobic001G483500 Sobic001G212000--Sobic001G483500 Sobic001G412700 Sobic001G412700 Sobic001G212000--Sobic001G412700 Sobic005G151700 Sobic005G151700 Sobic001G212000--Sobic005G151700 Sobic008G024400 Sobic008G024400 Sobic001G212000--Sobic008G024400 Sobic004G236600 Sobic004G236600 Sobic001G212000--Sobic004G236600 Sobic010G098100--Sobic001G483500 Sobic010G098100--Sobic005G151700 Sobic010G098100--Sobic001G212000 Sobic001G280200 Sobic001G280200 Sobic010G098100--Sobic001G280200 Sobic001G249300 Sobic001G249300 Sobic010G098100--Sobic001G249300 Sobic010G098100--Sobic005G152100 Sobic003G259200 Sobic003G259200 Sobic010G098100--Sobic003G259200 Sobic007G187300 Sobic007G187300 Sobic010G098100--Sobic007G187300 Sobic001G162700 Sobic001G162700 Sobic010G098100--Sobic001G162700 Sobic004G308000 Sobic004G308000 Sobic003G085300--Sobic004G308000 Sobic003G085300--Sobic001G212000 Sobic003G085300--Sobic005G152100 Sobic004G074500 Sobic004G074500 Sobic003G085300--Sobic004G074500 Sobic004G246200 Sobic004G246200 Sobic003G085300--Sobic004G246200 Sobic003G085300--Sobic001G412700 Sobic003G085300--Sobic008G024400 Sobic005G215900 Sobic005G215900 Sobic003G085300--Sobic005G215900 Sobic003G085300--Sobic001G101400 Sobic005G152100--Sobic004G246200 Sobic005G152100--Sobic004G236600 Sobic005G018500 Sobic005G018500 Sobic005G152100--Sobic005G018500 Sobic004G255000 Sobic004G255000 Sobic005G152100--Sobic004G255000 Sobic005G152100--Sobic001G249300 Sobic005G152100--Sobic003G259200 Sobic002G322900 Sobic002G322900 Sobic005G152100--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic005G152100--Sobic009G054500 Sobic005G152100--Sobic001G412700 Sobic001G101400--Sobic001G483500 Sobic010G016800 Sobic010G016800 Sobic001G101400--Sobic010G016800 Sobic005G215300 Sobic005G215300 Sobic001G101400--Sobic005G215300 Sobic001G101400--Sobic001G212000 Sobic004G006966 Sobic004G006966 Sobic001G101400--Sobic004G006966 Sobic001G483500--Sobic010G098100 Sobic001G483500--Sobic005G151700 Sobic001G483500--Sobic004G006966 Sobic001G483500--Sobic001G101400 Sobic001G251900 Sobic001G251900 Sobic001G483500--Sobic001G251900 Sobic001G412700--Sobic004G255000 Sobic001G412700--Sobic003G259200 Sobic001G412700--Sobic005G152100 Sobic003G269700 Sobic003G269700 Sobic001G412700--Sobic003G269700 Sobic001G412700--Sobic004G246200 Sobic001G412700--Sobic001G212000 Sobic009G029600 Sobic009G029600 Sobic001G412700--Sobic009G029600 Sobic001G412700--Sobic002G322900 Sobic001G412700--Sobic005G018500 Sobic005G151700--Sobic010G098100 Sobic005G151700--Sobic001G483500 Sobic005G151700--Sobic007G187300 Sobic005G151700--Sobic003G259200 Sobic003G219600 Sobic003G219600 Sobic005G151700--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic005G151700--Sobic009G211400 Sobic005G151700--Sobic001G249300 Sobic005G151700--Sobic005G018500 Sobic005G151700--Sobic009G029600 Sobic008G024400--Sobic005G152100 Sobic008G024400--Sobic004G246200 Sobic008G024400--Sobic001G412700 Sobic008G024400--Sobic004G255000 Sobic008G024400--Sobic004G236600 Sobic008G024400--Sobic001G249300 Sobic008G024400--Sobic001G280200 Sobic008G024400--Sobic001G212000 Sobic008G024400--Sobic005G215900 Sobic001G488500 Sobic001G488500 Sobic004G236600--Sobic001G488500 Sobic004G236600--Sobic005G152100 Sobic004G236600--Sobic002G322900 Sobic004G236600--Sobic004G255000 Sobic004G236600--Sobic004G246200 Sobic004G236600--Sobic001G412700 Sobic004G236600--Sobic008G024400 Sobic004G236600--Sobic005G215900 Sobic009G038501 Sobic009G038501 Sobic004G236600--Sobic009G038501
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.