Gene annotation
Transcriptome id Sobic.004G308000.1
Synonym Sb04g034056, RHS1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
EF hand family protein, putative, expressed
UniProt A0A194YTJ8
Pfam PF13202
Panther DB PTHR10891 PTHR10891:SF636
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G05990 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os02g52540.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G078670.1 , HORVU6Hr1G078670.2 , HORVU6Hr1G078670.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.002G057300 expressed protein -
3 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
4 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
5 Sobic.001G212000 GEM, putative, expressed -
6 Sobic.007G003200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
7 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
8 Sobic.001G151800 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
9 Sobic.006G218300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
10 Sobic.009G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
12 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
13 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
15 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
16 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
17 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
19 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
20 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G308000 Sobic004G308000 Sobic003G085300 Sobic003G085300 Sobic004G308000--Sobic003G085300 Sobic002G057300 Sobic002G057300 Sobic004G308000--Sobic002G057300 Sobic004G074500 Sobic004G074500 Sobic004G308000--Sobic004G074500 Sobic002G090200 Sobic002G090200 Sobic004G308000--Sobic002G090200 Sobic001G212000 Sobic001G212000 Sobic004G308000--Sobic001G212000 Sobic007G003200 Sobic007G003200 Sobic004G308000--Sobic007G003200 Sobic009G236200 Sobic009G236200 Sobic004G308000--Sobic009G236200 Sobic001G151800 Sobic001G151800 Sobic004G308000--Sobic001G151800 Sobic006G218300 Sobic006G218300 Sobic004G308000--Sobic006G218300 Sobic003G085300--Sobic004G308000 Sobic003G085300--Sobic001G212000 Sobic005G152100 Sobic005G152100 Sobic003G085300--Sobic005G152100 Sobic003G085300--Sobic004G074500 Sobic004G246200 Sobic004G246200 Sobic003G085300--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic003G085300--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic003G085300--Sobic008G024400 Sobic005G215900 Sobic005G215900 Sobic003G085300--Sobic005G215900 Sobic001G101400 Sobic001G101400 Sobic003G085300--Sobic001G101400 Sobic002G057300--Sobic004G308000 Sobic002G057300--Sobic002G090200 Sobic002G057300--Sobic003G085300 Sobic010G176700 Sobic010G176700 Sobic002G057300--Sobic010G176700 Sobic009G003900 Sobic009G003900 Sobic002G057300--Sobic009G003900 Sobic010G072000 Sobic010G072000 Sobic002G057300--Sobic010G072000 Sobic002G249000 Sobic002G249000 Sobic002G057300--Sobic002G249000 Sobic001G009900 Sobic001G009900 Sobic002G057300--Sobic001G009900 Sobic001G100700 Sobic001G100700 Sobic002G057300--Sobic001G100700 Sobic004G074500--Sobic003G085300 Sobic004G074500--Sobic002G090200 Sobic004G074500--Sobic004G308000 Sobic004G074500--Sobic007G003200 Sobic004G074500--Sobic004G246200 Sobic004G074500--Sobic001G101400 Sobic010G016800 Sobic010G016800 Sobic004G074500--Sobic010G016800 Sobic004G074500--Sobic001G212000 Sobic006G140000 Sobic006G140000 Sobic004G074500--Sobic006G140000 Sobic002G090200--Sobic006G218300 Sobic004G050000 Sobic004G050000 Sobic002G090200--Sobic004G050000 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic002G090200--Sobic004G308000 Sobic004G277000 Sobic004G277000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G090200--Sobic002G249000 Sobic010G098100 Sobic010G098100 Sobic001G212000--Sobic010G098100 Sobic001G212000--Sobic003G085300 Sobic001G212000--Sobic005G152100 Sobic001G212000--Sobic001G101400 Sobic001G483500 Sobic001G483500 Sobic001G212000--Sobic001G483500 Sobic001G212000--Sobic001G412700 Sobic005G151700 Sobic005G151700 Sobic001G212000--Sobic005G151700 Sobic001G212000--Sobic008G024400 Sobic004G236600 Sobic004G236600 Sobic001G212000--Sobic004G236600 Sobic007G003200--Sobic001G101400 Sobic007G003200--Sobic004G074500 Sobic007G003200--Sobic010G016800 Sobic007G003200--Sobic001G212000 Sobic006G261550 Sobic006G261550 Sobic007G003200--Sobic006G261550 Sobic007G003200--Sobic008G024400 Sobic007G003200--Sobic003G085300 Sobic002G209000 Sobic002G209000 Sobic007G003200--Sobic002G209000 Sobic007G003200--Sobic001G483500 Sobic009G236200--Sobic001G151800 Sobic007G125900 Sobic007G125900 Sobic009G236200--Sobic007G125900 Sobic002G355200 Sobic002G355200 Sobic009G236200--Sobic002G355200 Sobic005G016800 Sobic005G016800 Sobic009G236200--Sobic005G016800 Sobic002G381300 Sobic002G381300 Sobic009G236200--Sobic002G381300 Sobic009G236200--Sobic004G236600 Sobic009G167700 Sobic009G167700 Sobic009G236200--Sobic009G167700 Sobic004G102400 Sobic004G102400 Sobic009G236200--Sobic004G102400 Sobic009G236200--Sobic005G215900 Sobic001G151800--Sobic009G236200 Sobic001G151800--Sobic002G355200 Sobic001G151800--Sobic007G125900 Sobic003G232900 Sobic003G232900 Sobic001G151800--Sobic003G232900 Sobic003G348400 Sobic003G348400 Sobic001G151800--Sobic003G348400 Sobic001G151800--Sobic004G236600 Sobic005G117400 Sobic005G117400 Sobic001G151800--Sobic005G117400 Sobic001G151800--Sobic006G140000 Sobic009G004200 Sobic009G004200 Sobic001G151800--Sobic009G004200 Sobic006G218300--Sobic002G090200 Sobic001G066000 Sobic001G066000 Sobic006G218300--Sobic001G066000 Sobic006G218300--Sobic006G165400 Sobic009G043600 Sobic009G043600 Sobic006G218300--Sobic009G043600 Sobic006G218300--Sobic004G050000 Sobic006G121500 Sobic006G121500 Sobic006G218300--Sobic006G121500 Sobic002G367400 Sobic002G367400 Sobic006G218300--Sobic002G367400 Sobic009G254900 Sobic009G254900 Sobic006G218300--Sobic009G254900 Sobic006G199100 Sobic006G199100 Sobic006G218300--Sobic006G199100
Octagon: transcription factors


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