Gene annotation
Transcriptome id Sobic.002G057300.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q9F7
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g08800.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G308000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@EF hand family protein, putative, expressed -
2 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
3 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
4 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
5 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
6 Sobic.010G072000 "s cinnamyl alcohol dehydrogenases, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
7 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
8 Sobic.001G009900 pantoate--beta-alanine ligase, putative, expressed K01918: pantoate--beta-alanine ligase
9 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
10 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
11 Sobic.006G199100 pathogenesis-related Bet v I family protein, putative, expressed -
12 Sobic.006G218300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
13 Sobic.006G165400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glutamate dehydrogenase protein, putative, expressed K00261: GLUD1_2, glutamate dehydrogenase (NAD(P)+)
14 Sobic.005G177500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
15 Sobic.004G185900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
16 Sobic.004G277000 purine permease, putative, expressed -
17 Sobic.001G184000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
18 Sobic.009G224800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.001G026900 cytidine deaminase, putative, expressed -
20 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -


Gene co-expression network
sample Sobic002G057300 Sobic002G057300 Sobic004G308000 Sobic004G308000 Sobic002G057300--Sobic004G308000 Sobic002G090200 Sobic002G090200 Sobic002G057300--Sobic002G090200 Sobic003G085300 Sobic003G085300 Sobic002G057300--Sobic003G085300 Sobic010G176700 Sobic010G176700 Sobic002G057300--Sobic010G176700 Sobic009G003900 Sobic009G003900 Sobic002G057300--Sobic009G003900 Sobic010G072000 Sobic010G072000 Sobic002G057300--Sobic010G072000 Sobic002G249000 Sobic002G249000 Sobic002G057300--Sobic002G249000 Sobic001G009900 Sobic001G009900 Sobic002G057300--Sobic001G009900 Sobic001G100700 Sobic001G100700 Sobic002G057300--Sobic001G100700 Sobic004G308000--Sobic003G085300 Sobic004G308000--Sobic002G057300 Sobic004G074500 Sobic004G074500 Sobic004G308000--Sobic004G074500 Sobic004G308000--Sobic002G090200 Sobic001G212000 Sobic001G212000 Sobic004G308000--Sobic001G212000 Sobic007G003200 Sobic007G003200 Sobic004G308000--Sobic007G003200 Sobic009G236200 Sobic009G236200 Sobic004G308000--Sobic009G236200 Sobic001G151800 Sobic001G151800 Sobic004G308000--Sobic001G151800 Sobic006G218300 Sobic006G218300 Sobic004G308000--Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic004G050000 Sobic004G050000 Sobic002G090200--Sobic004G050000 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic002G090200--Sobic004G308000 Sobic004G277000 Sobic004G277000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G090200--Sobic002G249000 Sobic003G085300--Sobic004G308000 Sobic003G085300--Sobic001G212000 Sobic005G152100 Sobic005G152100 Sobic003G085300--Sobic005G152100 Sobic003G085300--Sobic004G074500 Sobic004G246200 Sobic004G246200 Sobic003G085300--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic003G085300--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic003G085300--Sobic008G024400 Sobic005G215900 Sobic005G215900 Sobic003G085300--Sobic005G215900 Sobic001G101400 Sobic001G101400 Sobic003G085300--Sobic001G101400 Sobic003G061400 Sobic003G061400 Sobic010G176700--Sobic003G061400 Sobic010G176700--Sobic002G249000 Sobic010G176700--Sobic009G003900 Sobic001G184000 Sobic001G184000 Sobic010G176700--Sobic001G184000 Sobic010G176700--Sobic002G057300 Sobic003G442500 Sobic003G442500 Sobic010G176700--Sobic003G442500 Sobic004G185900 Sobic004G185900 Sobic010G176700--Sobic004G185900 Sobic001G010400 Sobic001G010400 Sobic010G176700--Sobic001G010400 Sobic010G176700--Sobic004G277000 Sobic009G003900--Sobic004G277000 Sobic009G003900--Sobic002G249000 Sobic009G003900--Sobic004G050000 Sobic005G117400 Sobic005G117400 Sobic009G003900--Sobic005G117400 Sobic002G264400 Sobic002G264400 Sobic009G003900--Sobic002G264400 Sobic009G003900--Sobic001G184000 Sobic009G003900--Sobic002G090200 Sobic002G180600 Sobic002G180600 Sobic009G003900--Sobic002G180600 Sobic009G003900--Sobic010G072000 Sobic010G071900 Sobic010G071900 Sobic010G072000--Sobic010G071900 Sobic010G072000--Sobic004G277000 Sobic003G075500 Sobic003G075500 Sobic010G072000--Sobic003G075500 Sobic006G264300 Sobic006G264300 Sobic010G072000--Sobic006G264300 Sobic010G072000--Sobic002G180600 Sobic010G072000--Sobic009G003900 Sobic010G072000--Sobic002G264400 Sobic010G185500 Sobic010G185500 Sobic010G072000--Sobic010G185500 Sobic002G267500 Sobic002G267500 Sobic010G072000--Sobic002G267500 Sobic002G249000--Sobic004G277000 Sobic002G249000--Sobic001G010400 Sobic002G249000--Sobic004G050000 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic002G249000--Sobic005G117400 Sobic002G249000--Sobic010G176700 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic001G009900--Sobic001G100700 Sobic005G213200 Sobic005G213200 Sobic001G009900--Sobic005G213200 Sobic001G444400 Sobic001G444400 Sobic001G009900--Sobic001G444400 Sobic006G039700 Sobic006G039700 Sobic001G009900--Sobic006G039700 Sobic003G227300 Sobic003G227300 Sobic001G009900--Sobic003G227300 Sobic009G106800 Sobic009G106800 Sobic001G009900--Sobic009G106800 Sobic008G150800 Sobic008G150800 Sobic001G009900--Sobic008G150800 Sobic009G120000 Sobic009G120000 Sobic001G009900--Sobic009G120000 Sobic006G199100 Sobic006G199100 Sobic001G009900--Sobic006G199100 Sobic001G100700--Sobic005G213200 Sobic001G243500 Sobic001G243500 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G243600 Sobic001G243600 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic001G100700--Sobic009G120000 Sobic004G273400 Sobic004G273400 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000
Octagon: transcription factors


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