Gene annotation
Transcriptome id Sobic.002G090200.1
Synonym Sb02g007460
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
cytidine deaminase, putative, expressed
UniProt C5X214
Pfam PF00383
Panther DB PTHR11079 PTHR11079:SF90
NCBI CDD KOG1018; Cytosine deaminase FCY1 and related enzymes
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G28050 : Cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os03g61810.1 : tRNA-specific adenosine deaminase, putative, expressed
MaizeGDB (Corn) Zm00025a013601 , Zm00025a044952 , Zm00025a008898 , Zm00025a045496
Brachypodium KQK12288
Barley HORVU5Hr1G117480.4 , HORVU5Hr1G117480.1 , HORVU5Hr1G117480.3 , HORVU5Hr1G117480.2
Wheat TraesCS5D02G513700 , TraesCS4A02G358800 , TraesCS5D02G513700 , TraesCS5B02G513200 , TraesCS5B02G513200 , TraesCS5B02G513200 , TraesCS5D02G513700
Populus -


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cDNA sequences
Sobic.002G090200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G218300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
2 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
3 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
4 Sobic.006G165400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glutamate dehydrogenase protein, putative, expressed K00261: GLUD1_2, glutamate dehydrogenase (NAD(P)+)
5 Sobic.001G026900 cytidine deaminase, putative, expressed -
6 Sobic.004G308000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@EF hand family protein, putative, expressed -
7 Sobic.004G277000 purine permease, putative, expressed -
8 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
9 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
10 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
12 Sobic.006G199100 pathogenesis-related Bet v I family protein, putative, expressed -
13 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.002G057300 expressed protein -
15 Sobic.009G254900 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
16 Sobic.004G273100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@jmjC domain containing protein, expressed -
17 Sobic.003G425850 - K00799: GST, glutathione S-transferase
18 Sobic.006G121500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
19 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
20 Sobic.004G276100 expressed protein -


Gene co-expression network
sample Sobic002G090200 Sobic002G090200 Sobic006G218300 Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic004G050000 Sobic004G050000 Sobic002G090200--Sobic004G050000 Sobic004G074500 Sobic004G074500 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic004G308000 Sobic004G308000 Sobic002G090200--Sobic004G308000 Sobic004G277000 Sobic004G277000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G249000 Sobic002G249000 Sobic002G090200--Sobic002G249000 Sobic006G218300--Sobic002G090200 Sobic001G066000 Sobic001G066000 Sobic006G218300--Sobic001G066000 Sobic006G218300--Sobic006G165400 Sobic009G043600 Sobic009G043600 Sobic006G218300--Sobic009G043600 Sobic006G218300--Sobic004G050000 Sobic006G121500 Sobic006G121500 Sobic006G218300--Sobic006G121500 Sobic002G367400 Sobic002G367400 Sobic006G218300--Sobic002G367400 Sobic009G254900 Sobic009G254900 Sobic006G218300--Sobic009G254900 Sobic006G199100 Sobic006G199100 Sobic006G218300--Sobic006G199100 Sobic004G050000--Sobic009G043600 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic002G267500 Sobic002G267500 Sobic004G050000--Sobic002G267500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic003G085300 Sobic003G085300 Sobic004G074500--Sobic003G085300 Sobic004G074500--Sobic002G090200 Sobic004G074500--Sobic004G308000 Sobic007G003200 Sobic007G003200 Sobic004G074500--Sobic007G003200 Sobic004G246200 Sobic004G246200 Sobic004G074500--Sobic004G246200 Sobic001G101400 Sobic001G101400 Sobic004G074500--Sobic001G101400 Sobic010G016800 Sobic010G016800 Sobic004G074500--Sobic010G016800 Sobic001G212000 Sobic001G212000 Sobic004G074500--Sobic001G212000 Sobic006G140000 Sobic006G140000 Sobic004G074500--Sobic006G140000 Sobic006G165400--Sobic002G090200 Sobic006G165400--Sobic006G218300 Sobic006G165400--Sobic004G050000 Sobic006G165400--Sobic006G121500 Sobic006G165400--Sobic001G066000 Sobic003G280900 Sobic003G280900 Sobic006G165400--Sobic003G280900 Sobic009G009600 Sobic009G009600 Sobic006G165400--Sobic009G009600 Sobic010G069200 Sobic010G069200 Sobic006G165400--Sobic010G069200 Sobic006G165400--Sobic002G367400 Sobic001G227500 Sobic001G227500 Sobic001G026900--Sobic001G227500 Sobic001G026900--Sobic002G090200 Sobic001G026900--Sobic004G050000 Sobic004G276100 Sobic004G276100 Sobic001G026900--Sobic004G276100 Sobic001G026900--Sobic004G277000 Sobic002G083266 Sobic002G083266 Sobic001G026900--Sobic002G083266 Sobic001G026900--Sobic002G267500 Sobic008G179500 Sobic008G179500 Sobic001G026900--Sobic008G179500 Sobic001G026900--Sobic002G249000 Sobic004G308000--Sobic003G085300 Sobic002G057300 Sobic002G057300 Sobic004G308000--Sobic002G057300 Sobic004G308000--Sobic004G074500 Sobic004G308000--Sobic002G090200 Sobic004G308000--Sobic001G212000 Sobic004G308000--Sobic007G003200 Sobic009G236200 Sobic009G236200 Sobic004G308000--Sobic009G236200 Sobic001G151800 Sobic001G151800 Sobic004G308000--Sobic001G151800 Sobic004G308000--Sobic006G218300 Sobic004G277000--Sobic004G050000 Sobic004G277000--Sobic009G043600 Sobic004G277000--Sobic002G249000 Sobic009G003900 Sobic009G003900 Sobic004G277000--Sobic009G003900 Sobic004G277000--Sobic002G267500 Sobic006G173900 Sobic006G173900 Sobic004G277000--Sobic006G173900 Sobic004G277000--Sobic004G276100 Sobic004G277000--Sobic009G177800 Sobic002G264400 Sobic002G264400 Sobic004G277000--Sobic002G264400 Sobic001G401300 Sobic001G401300 Sobic003G215800--Sobic001G401300 Sobic005G137200 Sobic005G137200 Sobic003G215800--Sobic005G137200 Sobic003G215800--Sobic002G090200 Sobic001G454100 Sobic001G454100 Sobic003G215800--Sobic001G454100 Sobic008G034500 Sobic008G034500 Sobic003G215800--Sobic008G034500 Sobic001G466000 Sobic001G466000 Sobic003G215800--Sobic001G466000 Sobic010G107100 Sobic010G107100 Sobic003G215800--Sobic010G107100 Sobic004G058000 Sobic004G058000 Sobic003G215800--Sobic004G058000 Sobic010G004200 Sobic010G004200 Sobic003G215800--Sobic010G004200 Sobic002G249000--Sobic004G277000 Sobic001G010400 Sobic001G010400 Sobic002G249000--Sobic001G010400 Sobic002G249000--Sobic004G050000 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000
Octagon: transcription factors


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