Gene annotation
Transcriptome id Sobic.009G003900.1
Synonym ATRAB1C, ATRABD2C, Sb09g000550, RAB1C
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
ras-related protein, putative, expressed
UniProt C5YY07
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF539
NCBI CDD KOG0084; GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins
KEGG Orthology K07874; Ras-related protein Rab-1A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G17530 : RAB GTPase homolog 1C
RAP-DB (Rice) LOC_Os05g01490.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a040990 , Zm00025a038343
Brachypodium KQK08120 , KQK08121 , KQJ85531
Barley HORVU2Hr1G077230.6 , HORVU2Hr1G077230.11 , HORVU1Hr1G001910.10 , HORVU1Hr1G001910.11 , HORVU1Hr1G001910.12 , HORVU1Hr1G001910.6 , HORVU1Hr1G001910.7 , HORVU1Hr1G001910.4 , HORVU1Hr1G001910.5 , HORVU1Hr1G001910.2 , HORVU1Hr1G001910.3 , HORVU1Hr1G001910.1 , HORVU1Hr1G001910.8 , HORVU1Hr1G001910.9
Wheat TraesCS1A02G015300 , TraesCS1D02G013200 , TraesCS2B02G327900 , TraesCS1B02G019100 , TraesCS1B02G019100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G277000 purine permease, putative, expressed -
2 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
3 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
4 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
5 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
6 Sobic.001G184000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
7 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
8 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
9 Sobic.010G072000 "s cinnamyl alcohol dehydrogenases, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
10 Sobic.003G075500 mitochondrial carrier protein, putative, expressed -
11 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.002G057300 expressed protein -
14 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.006G264300 GA18008-PA, putative, expressed -
16 Sobic.008G107500 WRKY96, expressed -
17 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.001G026900 cytidine deaminase, putative, expressed -
19 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
20 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone


Gene co-expression network
sample Sobic009G003900 Sobic009G003900 Sobic004G277000 Sobic004G277000 Sobic009G003900--Sobic004G277000 Sobic002G249000 Sobic002G249000 Sobic009G003900--Sobic002G249000 Sobic004G050000 Sobic004G050000 Sobic009G003900--Sobic004G050000 Sobic005G117400 Sobic005G117400 Sobic009G003900--Sobic005G117400 Sobic002G264400 Sobic002G264400 Sobic009G003900--Sobic002G264400 Sobic001G184000 Sobic001G184000 Sobic009G003900--Sobic001G184000 Sobic002G090200 Sobic002G090200 Sobic009G003900--Sobic002G090200 Sobic002G180600 Sobic002G180600 Sobic009G003900--Sobic002G180600 Sobic010G072000 Sobic010G072000 Sobic009G003900--Sobic010G072000 Sobic004G277000--Sobic004G050000 Sobic009G043600 Sobic009G043600 Sobic004G277000--Sobic009G043600 Sobic004G277000--Sobic002G249000 Sobic004G277000--Sobic009G003900 Sobic002G267500 Sobic002G267500 Sobic004G277000--Sobic002G267500 Sobic006G173900 Sobic006G173900 Sobic004G277000--Sobic006G173900 Sobic004G276100 Sobic004G276100 Sobic004G277000--Sobic004G276100 Sobic009G177800 Sobic009G177800 Sobic004G277000--Sobic009G177800 Sobic004G277000--Sobic002G264400 Sobic002G249000--Sobic004G277000 Sobic001G010400 Sobic001G010400 Sobic002G249000--Sobic001G010400 Sobic002G249000--Sobic004G050000 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic004G058000 Sobic004G058000 Sobic005G117400--Sobic004G058000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic005G117400--Sobic010G224200 Sobic006G264300 Sobic006G264300 Sobic002G264400--Sobic006G264300 Sobic004G293700 Sobic004G293700 Sobic002G264400--Sobic004G293700 Sobic002G264400--Sobic002G267500 Sobic002G264400--Sobic002G180600 Sobic003G253000 Sobic003G253000 Sobic002G264400--Sobic003G253000 Sobic002G202300 Sobic002G202300 Sobic002G264400--Sobic002G202300 Sobic010G253800 Sobic010G253800 Sobic002G264400--Sobic010G253800 Sobic005G034400 Sobic005G034400 Sobic002G264400--Sobic005G034400 Sobic003G075500 Sobic003G075500 Sobic002G264400--Sobic003G075500 Sobic001G184000--Sobic009G003900 Sobic001G184000--Sobic003G075500 Sobic001G184000--Sobic010G176700 Sobic001G184000--Sobic004G277000 Sobic001G184000--Sobic002G249000 Sobic001G184000--Sobic001G010400 Sobic001G184000--Sobic010G224200 Sobic001G184000--Sobic005G117400 Sobic001G184000--Sobic006G264300 Sobic006G218300 Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic002G090200--Sobic004G050000 Sobic004G074500 Sobic004G074500 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic004G308000 Sobic004G308000 Sobic002G090200--Sobic004G308000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G090200--Sobic002G249000 Sobic002G180600--Sobic002G264400 Sobic002G180600--Sobic006G264300 Sobic002G282400 Sobic002G282400 Sobic002G180600--Sobic002G282400 Sobic002G180600--Sobic010G253800 Sobic006G141500 Sobic006G141500 Sobic002G180600--Sobic006G141500 Sobic002G180600--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic002G180600--Sobic003G333400 Sobic001G329100 Sobic001G329100 Sobic002G180600--Sobic001G329100 Sobic010G071900 Sobic010G071900 Sobic002G180600--Sobic010G071900 Sobic010G072000--Sobic010G071900 Sobic010G072000--Sobic004G277000 Sobic010G072000--Sobic003G075500 Sobic010G072000--Sobic006G264300 Sobic010G072000--Sobic002G180600 Sobic010G072000--Sobic009G003900 Sobic010G072000--Sobic002G264400 Sobic010G185500 Sobic010G185500 Sobic010G072000--Sobic010G185500 Sobic010G072000--Sobic002G267500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.