Gene annotation
Transcriptome id Sobic.008G107500.1
Synonym Sb08g016240, WRKY3
Functional annotation WRKY96, expressed
UniProt C5YP19
Pfam PF03106
Panther DB PTHR31221 PTHR31221:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G03340 : WRKY DNA-binding protein 3
RAP-DB (Rice) LOC_Os12g32250.1 : WRKY96, expressed
MaizeGDB (Corn) Zm00025a025582 , Zm00025a040668
Brachypodium PNT74517 , PNT74516 , PNT74515 , KQK14419 , KQK14422 , KQK14420 , KQK14421 , KQJ86615
Barley HORVU4Hr1G048400.8 , HORVU4Hr1G048400.9 , HORVU4Hr1G048400.2 , HORVU4Hr1G048400.3 , HORVU4Hr1G048400.1 , HORVU4Hr1G048400.7 , HORVU4Hr1G048400.4 , HORVU4Hr1G048400.5 , HORVU4Hr1G048400.12 , HORVU4Hr1G048400.10 , HORVU4Hr1G048400.11 , HORVU5Hr1G028340.2 , HORVU5Hr1G028340.3 , HORVU5Hr1G028340.1
Wheat TraesCS4A02G162500 , TraesCS5D02G116100 , TraesCS5A02G104900 , TraesCS5B02G108500 , TraesCS4B02G165900 , TraesCS4B02G165900 , TraesCS4D02G151700
Populus PNS95969 , PNS95970


JBrowse

Open New Page


cDNA sequences
Sobic.008G107500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
3 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
4 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
5 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
6 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
7 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
8 Sobic.002G175500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
9 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
10 Sobic.010G253800 expressed protein -
11 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
12 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
14 Sobic.002G223200 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
15 Sobic.002G296300 expressed protein -
16 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
17 Sobic.009G177400 leucine-rich repeat family protein, putative, expressed -
18 Sobic.004G021300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein


Gene co-expression network
sample Sobic008G107500 Sobic008G107500 Sobic002G258100 Sobic002G258100 Sobic008G107500--Sobic002G258100 Sobic001G393800 Sobic001G393800 Sobic008G107500--Sobic001G393800 Sobic005G150800 Sobic005G150800 Sobic008G107500--Sobic005G150800 Sobic002G180600 Sobic002G180600 Sobic008G107500--Sobic002G180600 Sobic001G010400 Sobic001G010400 Sobic008G107500--Sobic001G010400 Sobic003G295400 Sobic003G295400 Sobic008G107500--Sobic003G295400 Sobic004G203100 Sobic004G203100 Sobic008G107500--Sobic004G203100 Sobic002G175500 Sobic002G175500 Sobic008G107500--Sobic002G175500 Sobic009G003900 Sobic009G003900 Sobic008G107500--Sobic009G003900 Sobic002G258100--Sobic002G175500 Sobic002G258100--Sobic008G107500 Sobic010G144400 Sobic010G144400 Sobic002G258100--Sobic010G144400 Sobic002G258100--Sobic001G010400 Sobic001G023200 Sobic001G023200 Sobic002G258100--Sobic001G023200 Sobic001G253600 Sobic001G253600 Sobic002G258100--Sobic001G253600 Sobic001G056700 Sobic001G056700 Sobic002G258100--Sobic001G056700 Sobic004G172700 Sobic004G172700 Sobic002G258100--Sobic004G172700 Sobic002G258100--Sobic001G393800 Sobic001G393800--Sobic008G107500 Sobic001G393800--Sobic005G150800 Sobic001G393800--Sobic001G010400 Sobic003G333400 Sobic003G333400 Sobic001G393800--Sobic003G333400 Sobic004G167400 Sobic004G167400 Sobic001G393800--Sobic004G167400 Sobic001G057800 Sobic001G057800 Sobic001G393800--Sobic001G057800 Sobic001G393800--Sobic002G175500 Sobic009G099500 Sobic009G099500 Sobic001G393800--Sobic009G099500 Sobic001G393800--Sobic001G023200 Sobic004G102400 Sobic004G102400 Sobic005G150800--Sobic004G102400 Sobic005G150800--Sobic001G393800 Sobic005G150800--Sobic008G107500 Sobic003G009100 Sobic003G009100 Sobic005G150800--Sobic003G009100 Sobic009G167700 Sobic009G167700 Sobic005G150800--Sobic009G167700 Sobic005G150800--Sobic001G057800 Sobic003G354400 Sobic003G354400 Sobic005G150800--Sobic003G354400 Sobic006G114800 Sobic006G114800 Sobic005G150800--Sobic006G114800 Sobic005G150800--Sobic004G167400 Sobic002G264400 Sobic002G264400 Sobic002G180600--Sobic002G264400 Sobic006G264300 Sobic006G264300 Sobic002G180600--Sobic006G264300 Sobic002G282400 Sobic002G282400 Sobic002G180600--Sobic002G282400 Sobic010G253800 Sobic010G253800 Sobic002G180600--Sobic010G253800 Sobic006G141500 Sobic006G141500 Sobic002G180600--Sobic006G141500 Sobic002G249000 Sobic002G249000 Sobic002G180600--Sobic002G249000 Sobic002G180600--Sobic003G333400 Sobic001G329100 Sobic001G329100 Sobic002G180600--Sobic001G329100 Sobic010G071900 Sobic010G071900 Sobic002G180600--Sobic010G071900 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G010400--Sobic001G393800 Sobic001G010400--Sobic002G258100 Sobic001G010400--Sobic002G180600 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic003G007500 Sobic003G007500 Sobic003G295400--Sobic003G007500 Sobic006G225600 Sobic006G225600 Sobic003G295400--Sobic006G225600 Sobic003G295400--Sobic010G253800 Sobic002G251700 Sobic002G251700 Sobic003G295400--Sobic002G251700 Sobic001G078500 Sobic001G078500 Sobic003G295400--Sobic001G078500 Sobic001G051200 Sobic001G051200 Sobic003G295400--Sobic001G051200 Sobic009G193400 Sobic009G193400 Sobic003G295400--Sobic009G193400 Sobic010G168600 Sobic010G168600 Sobic003G295400--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic003G295400--Sobic009G171700 Sobic004G203100--Sobic010G168600 Sobic004G203100--Sobic003G007500 Sobic002G352700 Sobic002G352700 Sobic004G203100--Sobic002G352700 Sobic001G478300 Sobic001G478300 Sobic004G203100--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic004G203100--Sobic008G180900 Sobic010G238700 Sobic010G238700 Sobic004G203100--Sobic010G238700 Sobic009G054700 Sobic009G054700 Sobic004G203100--Sobic009G054700 Sobic010G083700 Sobic010G083700 Sobic004G203100--Sobic010G083700 Sobic010G058900 Sobic010G058900 Sobic004G203100--Sobic010G058900 Sobic002G175500--Sobic002G258100 Sobic002G175500--Sobic001G393800 Sobic002G175500--Sobic008G107500 Sobic002G175500--Sobic001G023200 Sobic009G177400 Sobic009G177400 Sobic002G175500--Sobic009G177400 Sobic006G157700 Sobic006G157700 Sobic002G175500--Sobic006G157700 Sobic002G175500--Sobic001G010400 Sobic002G175500--Sobic001G253600 Sobic002G175500--Sobic003G009100 Sobic004G277000 Sobic004G277000 Sobic009G003900--Sobic004G277000 Sobic009G003900--Sobic002G249000 Sobic004G050000 Sobic004G050000 Sobic009G003900--Sobic004G050000 Sobic005G117400 Sobic005G117400 Sobic009G003900--Sobic005G117400 Sobic009G003900--Sobic002G264400 Sobic001G184000 Sobic001G184000 Sobic009G003900--Sobic001G184000 Sobic002G090200 Sobic002G090200 Sobic009G003900--Sobic002G090200 Sobic009G003900--Sobic002G180600 Sobic010G072000 Sobic010G072000 Sobic009G003900--Sobic010G072000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.