Gene annotation
Transcriptome id Sobic.001G010400.1
Synonym Sb01g001020
Functional annotation snRK1-interacting protein 1, putative, expressed
UniProt C5WS27
Pfam -
Panther DB PTHR34050 PTHR34050:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47870 : -
RAP-DB (Rice) LOC_Os03g63450.2 : snRK1-interacting protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a009048
Brachypodium KQK12081
Barley HORVU5Hr1G078090.2 , HORVU5Hr1G078090.1 , HORVU7Hr1G022770.1 , HORVU5Hr1G122680.8 , HORVU5Hr1G122680.9 , HORVU5Hr1G122680.6 , HORVU5Hr1G122680.7 , HORVU5Hr1G122680.5 , HORVU4Hr1G070550.1
Wheat TraesCS5D02G303500 , TraesCS5B02G295500 , TraesCS5D02G544900 , TraesCS4A02G328900 , TraesCS5A02G296300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
2 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
3 Sobic.004G185900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
4 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
5 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
6 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
8 Sobic.008G107500 WRKY96, expressed -
9 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
10 Sobic.004G276100 expressed protein -
11 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
12 Sobic.009G111600 expressed protein -
13 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.007G098400 tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
16 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.009G082700 serine/threonine-protein kinase receptor precursor, putative, expressed -
19 Sobic.003G259700 transmembrane protein 93, putative, expressed -
20 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A


Gene co-expression network
sample Sobic001G010400 Sobic001G010400 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic002G249000--Sobic001G010400 Sobic004G050000 Sobic004G050000 Sobic002G249000--Sobic004G050000 Sobic009G003900 Sobic009G003900 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic007G148800--Sobic001G010400 Sobic007G148800--Sobic010G016400 Sobic006G217700 Sobic006G217700 Sobic007G148800--Sobic006G217700 Sobic007G148800--Sobic004G185900 Sobic007G148700 Sobic007G148700 Sobic007G148800--Sobic007G148700 Sobic005G139400 Sobic005G139400 Sobic007G148800--Sobic005G139400 Sobic006G140000 Sobic006G140000 Sobic007G148800--Sobic006G140000 Sobic004G347300 Sobic004G347300 Sobic007G148800--Sobic004G347300 Sobic007G148800--Sobic002G113800 Sobic004G185900--Sobic001G010400 Sobic004G185900--Sobic007G148800 Sobic004G185900--Sobic006G140000 Sobic004G054300 Sobic004G054300 Sobic004G185900--Sobic004G054300 Sobic004G185900--Sobic010G016400 Sobic004G185900--Sobic002G249000 Sobic004G185900--Sobic002G113800 Sobic004G185900--Sobic005G139400 Sobic004G185900--Sobic010G176700 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic003G259700 Sobic003G259700 Sobic002G113800--Sobic003G259700 Sobic001G033500 Sobic001G033500 Sobic002G113800--Sobic001G033500 Sobic002G113800--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic006G114400 Sobic006G114400 Sobic002G113800--Sobic006G114400 Sobic007G142500 Sobic007G142500 Sobic002G113800--Sobic007G142500 Sobic002G113800--Sobic006G217700 Sobic001G393800--Sobic008G107500 Sobic005G150800 Sobic005G150800 Sobic001G393800--Sobic005G150800 Sobic001G393800--Sobic001G010400 Sobic003G333400 Sobic003G333400 Sobic001G393800--Sobic003G333400 Sobic004G167400 Sobic004G167400 Sobic001G393800--Sobic004G167400 Sobic001G057800 Sobic001G057800 Sobic001G393800--Sobic001G057800 Sobic002G175500 Sobic002G175500 Sobic001G393800--Sobic002G175500 Sobic009G099500 Sobic009G099500 Sobic001G393800--Sobic009G099500 Sobic001G023200 Sobic001G023200 Sobic001G393800--Sobic001G023200 Sobic002G258100--Sobic002G175500 Sobic002G258100--Sobic008G107500 Sobic010G144400 Sobic010G144400 Sobic002G258100--Sobic010G144400 Sobic002G258100--Sobic001G010400 Sobic002G258100--Sobic001G023200 Sobic001G253600 Sobic001G253600 Sobic002G258100--Sobic001G253600 Sobic001G056700 Sobic001G056700 Sobic002G258100--Sobic001G056700 Sobic004G172700 Sobic004G172700 Sobic002G258100--Sobic004G172700 Sobic002G258100--Sobic001G393800 Sobic002G264400 Sobic002G264400 Sobic002G180600--Sobic002G264400 Sobic006G264300 Sobic006G264300 Sobic002G180600--Sobic006G264300 Sobic002G282400 Sobic002G282400 Sobic002G180600--Sobic002G282400 Sobic010G253800 Sobic010G253800 Sobic002G180600--Sobic010G253800 Sobic006G141500 Sobic006G141500 Sobic002G180600--Sobic006G141500 Sobic002G180600--Sobic002G249000 Sobic002G180600--Sobic003G333400 Sobic001G329100 Sobic001G329100 Sobic002G180600--Sobic001G329100 Sobic010G071900 Sobic010G071900 Sobic002G180600--Sobic010G071900 Sobic008G107500--Sobic002G258100 Sobic008G107500--Sobic001G393800 Sobic008G107500--Sobic005G150800 Sobic008G107500--Sobic002G180600 Sobic008G107500--Sobic001G010400 Sobic003G295400 Sobic003G295400 Sobic008G107500--Sobic003G295400 Sobic004G203100 Sobic004G203100 Sobic008G107500--Sobic004G203100 Sobic008G107500--Sobic002G175500 Sobic008G107500--Sobic009G003900 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500
Octagon: transcription factors


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