Gene annotation
Transcriptome id Sobic.007G148800.1
Synonym Sb07g022290
Functional annotation cupin superfamily protein, putative, expressed
UniProt C5YLT8
Pfam PF06172
Panther DB PTHR33387 PTHR33387:SF1
NCBI CDD -
KEGG Orthology K09705; uncharacterized protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19130 : -
RAP-DB (Rice) LOC_Os08g35480.1 : cupin superfamily protein, putative, expressed
MaizeGDB (Corn) Zm00025a005756
Brachypodium KQJ98550
Barley HORVU6Hr1G072510.1
Wheat TraesCS6B02G318900 , TraesCS6D02G269800 , TraesCS6A02G289100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G148800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
2 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
3 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
4 Sobic.004G185900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
5 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
6 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
7 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
9 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
10 Sobic.003G054900 KIP1, putative, expressed -
11 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
12 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
13 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
14 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
15 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
17 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
18 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
19 Sobic.001G330700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.009G111600 expressed protein -


Gene co-expression network
sample Sobic007G148800 Sobic007G148800 Sobic001G010400 Sobic001G010400 Sobic007G148800--Sobic001G010400 Sobic010G016400 Sobic010G016400 Sobic007G148800--Sobic010G016400 Sobic006G217700 Sobic006G217700 Sobic007G148800--Sobic006G217700 Sobic004G185900 Sobic004G185900 Sobic007G148800--Sobic004G185900 Sobic007G148700 Sobic007G148700 Sobic007G148800--Sobic007G148700 Sobic005G139400 Sobic005G139400 Sobic007G148800--Sobic005G139400 Sobic006G140000 Sobic006G140000 Sobic007G148800--Sobic006G140000 Sobic004G347300 Sobic004G347300 Sobic007G148800--Sobic004G347300 Sobic002G113800 Sobic002G113800 Sobic007G148800--Sobic002G113800 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic001G010400--Sobic007G148800 Sobic001G010400--Sobic004G185900 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic006G217700--Sobic007G148800 Sobic004G185900--Sobic001G010400 Sobic004G185900--Sobic007G148800 Sobic004G185900--Sobic006G140000 Sobic004G185900--Sobic004G054300 Sobic004G185900--Sobic010G016400 Sobic004G185900--Sobic002G249000 Sobic004G185900--Sobic002G113800 Sobic004G185900--Sobic005G139400 Sobic010G176700 Sobic010G176700 Sobic004G185900--Sobic010G176700 Sobic007G148700--Sobic006G217700 Sobic007G148700--Sobic010G016400 Sobic007G148700--Sobic007G148800 Sobic003G321300 Sobic003G321300 Sobic007G148700--Sobic003G321300 Sobic003G052400 Sobic003G052400 Sobic007G148700--Sobic003G052400 Sobic007G148700--Sobic010G017000 Sobic001G237500 Sobic001G237500 Sobic007G148700--Sobic001G237500 Sobic001G403700 Sobic001G403700 Sobic007G148700--Sobic001G403700 Sobic007G148700--Sobic009G238800 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic005G139400--Sobic002G113800 Sobic001G132000 Sobic001G132000 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic005G139400--Sobic004G185900 Sobic001G488500 Sobic001G488500 Sobic006G140000--Sobic001G488500 Sobic003G348400 Sobic003G348400 Sobic006G140000--Sobic003G348400 Sobic006G140000--Sobic004G185900 Sobic003G338400 Sobic003G338400 Sobic006G140000--Sobic003G338400 Sobic001G151800 Sobic001G151800 Sobic006G140000--Sobic001G151800 Sobic005G215900 Sobic005G215900 Sobic006G140000--Sobic005G215900 Sobic003G085300 Sobic003G085300 Sobic006G140000--Sobic003G085300 Sobic006G140000--Sobic010G016400 Sobic006G140000--Sobic004G102400 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic004G347300--Sobic006G119200 Sobic004G347300--Sobic007G148800 Sobic004G347300--Sobic001G132000 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic003G259700 Sobic003G259700 Sobic002G113800--Sobic003G259700 Sobic002G113800--Sobic001G033500 Sobic002G113800--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic006G114400 Sobic006G114400 Sobic002G113800--Sobic006G114400 Sobic007G142500 Sobic007G142500 Sobic002G113800--Sobic007G142500 Sobic002G113800--Sobic006G217700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.