Gene annotation
Transcriptome id Sobic.006G217700.1
Synonym Sb06g028740, GSNAP, GAMMA-SNAP
Functional annotation gamma-soluble NSF attachment protein, putative, expressed
UniProt C5YG37
Pfam PF14938
Panther DB PTHR13768 PTHR13768:SF2
NCBI CDD KOG1585; Protein required for fusion of vesicles in vesicular transport, gamma-SNAP
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport


Orthologs (automatic annotation)
TAIR AT4G20410 : gamma-soluble NSF attachment protein
RAP-DB (Rice) LOC_Os04g52760.1 : gamma-soluble NSF attachment protein, putative, expressed
MaizeGDB (Corn) Zm00025a009972 , Zm00025a040928 , Zm00025a057042
Brachypodium PNT61864
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G217700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
2 Sobic.009G238800 expressed protein -
3 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
4 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
5 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
6 Sobic.004G132300 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
7 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
8 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
9 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
10 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
11 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
12 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
13 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
14 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
15 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
16 Sobic.002G378800 GRAM domain containing protein, expressed -
17 Sobic.003G052400 proline-rich family protein, putative, expressed -
18 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
19 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
20 Sobic.001G117300 expressed protein -


Gene co-expression network
sample Sobic006G217700 Sobic006G217700 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic006G222400 Sobic006G222400 Sobic010G017000--Sobic006G222400 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic003G052400 Sobic003G052400 Sobic010G017000--Sobic003G052400 Sobic009G160200 Sobic009G160200 Sobic010G017000--Sobic009G160200 Sobic003G038600 Sobic003G038600 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic010G080200 Sobic010G080200 Sobic009G238800--Sobic010G080200 Sobic006G232000 Sobic006G232000 Sobic009G238800--Sobic006G232000 Sobic009G238800--Sobic006G217700 Sobic009G238800--Sobic001G033500 Sobic002G376300 Sobic002G376300 Sobic009G238800--Sobic002G376300 Sobic006G148200 Sobic006G148200 Sobic009G238800--Sobic006G148200 Sobic001G048700 Sobic001G048700 Sobic009G238800--Sobic001G048700 Sobic001G067900 Sobic001G067900 Sobic009G238800--Sobic001G067900 Sobic001G206900 Sobic001G206900 Sobic009G238800--Sobic001G206900 Sobic001G323000--Sobic001G206900 Sobic006G034000 Sobic006G034000 Sobic001G323000--Sobic006G034000 Sobic009G228700 Sobic009G228700 Sobic001G323000--Sobic009G228700 Sobic001G323000--Sobic001G057800 Sobic003G312200 Sobic003G312200 Sobic001G323000--Sobic003G312200 Sobic001G323000--Sobic006G148200 Sobic009G207000 Sobic009G207000 Sobic001G323000--Sobic009G207000 Sobic010G000900 Sobic010G000900 Sobic001G323000--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G323000--Sobic001G085100 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic004G054300--Sobic006G217700 Sobic006G264300 Sobic006G264300 Sobic004G054300--Sobic006G264300 Sobic003G023500 Sobic003G023500 Sobic004G054300--Sobic003G023500 Sobic001G089500 Sobic001G089500 Sobic004G054300--Sobic001G089500 Sobic004G185900 Sobic004G185900 Sobic004G054300--Sobic004G185900 Sobic002G296300 Sobic002G296300 Sobic004G054300--Sobic002G296300 Sobic002G083266 Sobic002G083266 Sobic004G054300--Sobic002G083266 Sobic002G113800 Sobic002G113800 Sobic004G054300--Sobic002G113800 Sobic002G309400 Sobic002G309400 Sobic004G054300--Sobic002G309400 Sobic001G283200 Sobic001G283200 Sobic004G132300--Sobic001G283200 Sobic004G132300--Sobic001G033500 Sobic004G132300--Sobic006G217700 Sobic004G132300--Sobic001G206900 Sobic004G132300--Sobic006G148200 Sobic001G237500 Sobic001G237500 Sobic004G132300--Sobic001G237500 Sobic002G294200 Sobic002G294200 Sobic004G132300--Sobic002G294200 Sobic004G274400 Sobic004G274400 Sobic004G132300--Sobic004G274400 Sobic004G132300--Sobic006G034000 Sobic001G057800--Sobic001G323000 Sobic002G400000 Sobic002G400000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic002G385900 Sobic002G385900 Sobic001G057800--Sobic002G385900 Sobic001G158500 Sobic001G158500 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic001G057800--Sobic010G000900 Sobic010G168600 Sobic010G168600 Sobic001G057800--Sobic010G168600 Sobic001G057800--Sobic009G207000 Sobic001G033500--Sobic001G283200 Sobic007G184500 Sobic007G184500 Sobic001G033500--Sobic007G184500 Sobic001G033500--Sobic006G148200 Sobic007G118000 Sobic007G118000 Sobic001G033500--Sobic007G118000 Sobic001G033500--Sobic001G085100 Sobic010G073100 Sobic010G073100 Sobic001G033500--Sobic010G073100 Sobic001G458700 Sobic001G458700 Sobic001G033500--Sobic001G458700 Sobic001G033500--Sobic002G113800 Sobic003G012200 Sobic003G012200 Sobic001G033500--Sobic003G012200 Sobic007G148800--Sobic001G010400 Sobic007G148800--Sobic010G016400 Sobic007G148800--Sobic006G217700 Sobic007G148800--Sobic004G185900 Sobic007G148700 Sobic007G148700 Sobic007G148800--Sobic007G148700 Sobic007G148800--Sobic005G139400 Sobic006G140000 Sobic006G140000 Sobic007G148800--Sobic006G140000 Sobic007G148800--Sobic004G347300 Sobic007G148800--Sobic002G113800
Octagon: transcription factors


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