Gene annotation
Transcriptome id Sobic.003G005200.1
Synonym Sb03g000640, ATSEC22, SEC22
Functional annotation 25.3 kDa vesicle transport protein, putative, expressed
UniProt A0A1B6Q0M0
Pfam PF00957 PF13774
Panther DB PTHR21136 PTHR21136:SF89
NCBI CDD KOG0862; Synaptobrevin/VAMP-like protein SEC22
KEGG Orthology K08517; vesicle transport protein SEC22
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G11890 : Synaptobrevin family protein
RAP-DB (Rice) LOC_Os06g09850.1 : 25.3 kDa vesicle transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a008525 , Zm00025a053833 , Zm00025a052549 , Zm00025a022803 , Zm00025a029042
Brachypodium KQK03464 , KQK12808 , KQK12809
Barley HORVU5Hr1G035420.1 , HORVU5Hr1G035420.3 , HORVU5Hr1G035420.4 , HORVU5Hr1G104020.4 , HORVU5Hr1G104020.2 , HORVU5Hr1G104020.1 , HORVU3Hr1G032060.2 , HORVU3Hr1G032060.3 , HORVU3Hr1G032060.1 , HORVU3Hr1G032060.6 , HORVU3Hr1G032060.7 , HORVU3Hr1G032060.4 , HORVU3Hr1G032060.5 , HORVU5Hr1G039540.5 , HORVU5Hr1G039540.3 , HORVU5Hr1G039540.1
Wheat TraesCS3D02G165300 , TraesCS5A02G428800 , TraesCS3B02G184700 , TraesCS3A02G157800 , TraesCS5D02G436900 , TraesCS5B02G430800
Populus -


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cDNA sequences
Sobic.003G005200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
2 Sobic.009G160600 Yip1 domain containing protein, expressed -
3 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
4 Sobic.006G225300 expressed protein -
5 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
6 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
7 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
8 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
9 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
10 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
11 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
12 Sobic.004G194900 expressed protein -
13 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
14 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
15 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
17 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
18 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
19 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
20 Sobic.009G068100 expressed protein -


Gene co-expression network
sample Sobic003G005200 Sobic003G005200 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic009G160600 Sobic009G160600 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G038600 Sobic003G038600 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic009G058500 Sobic009G058500 Sobic003G005200--Sobic009G058500 Sobic002G300700--Sobic001G360200 Sobic006G252700 Sobic006G252700 Sobic002G300700--Sobic006G252700 Sobic002G300700--Sobic003G005200 Sobic003G422900 Sobic003G422900 Sobic002G300700--Sobic003G422900 Sobic009G164000 Sobic009G164000 Sobic002G300700--Sobic009G164000 Sobic004G066200 Sobic004G066200 Sobic002G300700--Sobic004G066200 Sobic006G278700 Sobic006G278700 Sobic002G300700--Sobic006G278700 Sobic004G039600 Sobic004G039600 Sobic002G300700--Sobic004G039600 Sobic003G352200 Sobic003G352200 Sobic002G300700--Sobic003G352200 Sobic001G005600 Sobic001G005600 Sobic009G160600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic009G160600--Sobic001G161900 Sobic003G382900 Sobic003G382900 Sobic009G160600--Sobic003G382900 Sobic004G323700 Sobic004G323700 Sobic009G160600--Sobic004G323700 Sobic009G160600--Sobic003G005200 Sobic003G150900 Sobic003G150900 Sobic009G160600--Sobic003G150900 Sobic010G129600 Sobic010G129600 Sobic009G160600--Sobic010G129600 Sobic007G056500 Sobic007G056500 Sobic009G160600--Sobic007G056500 Sobic001G042200 Sobic001G042200 Sobic009G160600--Sobic001G042200 Sobic001G360200--Sobic006G278700 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic001G360200--Sobic006G252700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic001G294900 Sobic001G294900 Sobic006G225300--Sobic001G294900 Sobic003G201900 Sobic003G201900 Sobic006G225300--Sobic003G201900 Sobic010G193800 Sobic010G193800 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic001G439600 Sobic001G439600 Sobic006G225300--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic006G225300--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic006G225300--Sobic001G532100 Sobic004G104900 Sobic004G104900 Sobic006G225300--Sobic004G104900 Sobic009G135600 Sobic009G135600 Sobic006G225300--Sobic009G135600 Sobic003G261400 Sobic003G261400 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic003G007500 Sobic003G007500 Sobic002G281300--Sobic003G007500 Sobic001G067900 Sobic001G067900 Sobic002G281300--Sobic001G067900 Sobic010G205300 Sobic010G205300 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic001G054200 Sobic001G054200 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300 Sobic009G258400 Sobic009G258400 Sobic004G091200--Sobic009G258400 Sobic004G091200--Sobic001G005600 Sobic004G091200--Sobic003G005200 Sobic004G091200--Sobic010G129600 Sobic001G473600 Sobic001G473600 Sobic004G091200--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic004G091200--Sobic001G114500 Sobic002G105200 Sobic002G105200 Sobic004G091200--Sobic002G105200 Sobic004G091200--Sobic003G201900 Sobic004G091200--Sobic003G038600 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic001G010700 Sobic001G010700 Sobic003G021200--Sobic001G010700 Sobic006G222400 Sobic006G222400 Sobic003G021200--Sobic006G222400 Sobic003G021200--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic003G021200--Sobic003G043400 Sobic004G335000 Sobic004G335000 Sobic003G021200--Sobic004G335000 Sobic001G402300 Sobic001G402300 Sobic003G021200--Sobic001G402300 Sobic002G428200 Sobic002G428200 Sobic003G021200--Sobic002G428200 Sobic010G238700 Sobic010G238700 Sobic003G021200--Sobic010G238700 Sobic006G127000 Sobic006G127000 Sobic003G021200--Sobic006G127000 Sobic009G058500--Sobic001G360200 Sobic009G058500--Sobic007G184500 Sobic010G018700 Sobic010G018700 Sobic009G058500--Sobic010G018700 Sobic002G077900 Sobic002G077900 Sobic009G058500--Sobic002G077900 Sobic003G439800 Sobic003G439800 Sobic009G058500--Sobic003G439800 Sobic003G074400 Sobic003G074400 Sobic009G058500--Sobic003G074400 Sobic009G058500--Sobic006G278700 Sobic006G044600 Sobic006G044600 Sobic009G058500--Sobic006G044600 Sobic004G346100 Sobic004G346100 Sobic009G058500--Sobic004G346100
Octagon: transcription factors


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