Gene annotation
Transcriptome id Sobic.010G080200.1
Synonym Sb10g006960
Functional annotation emp24/gp25L/p24 family protein, putative, expressed
UniProt C5Z6F2
Pfam PF01105
Panther DB PTHR22811 PTHR22811:SF68
NCBI CDD KOG1691; emp24/gp25L/p24 family of membrane trafficking proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G09580 : emp24/gp25L/p24 family/GOLD family protein
RAP-DB (Rice) LOC_Os06g10760.1 : emp24/gp25L/p24 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042506
Brachypodium -
Barley HORVU7Hr1G035390.1 , HORVU7Hr1G035390.3 , HORVU7Hr1G035390.2
Wheat TraesCS7A02G169500 , TraesCS7B02G074300 , TraesCS7D02G170400
Populus -


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cDNA sequences
Sobic.010G080200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
2 Sobic.009G238800 expressed protein -
3 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
4 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
5 Sobic.005G155700 methyltransferase, putative, expressed -
6 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
7 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
8 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
9 Sobic.010G205300 secreted salivary protein, putative, expressed -
10 Sobic.009G088100 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
12 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
13 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
14 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
15 Sobic.003G261400 DUF292 domain containing protein, expressed -
16 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
17 Sobic.001G048700 TBC domain containing protein, expressed -
18 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
19 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
20 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -


Gene co-expression network
sample Sobic010G080200 Sobic010G080200 Sobic001G051200 Sobic001G051200 Sobic010G080200--Sobic001G051200 Sobic009G238800 Sobic009G238800 Sobic010G080200--Sobic009G238800 Sobic002G281300 Sobic002G281300 Sobic010G080200--Sobic002G281300 Sobic006G217700 Sobic006G217700 Sobic010G080200--Sobic006G217700 Sobic005G155700 Sobic005G155700 Sobic010G080200--Sobic005G155700 Sobic001G033500 Sobic001G033500 Sobic010G080200--Sobic001G033500 Sobic001G057800 Sobic001G057800 Sobic010G080200--Sobic001G057800 Sobic002G202400 Sobic002G202400 Sobic010G080200--Sobic002G202400 Sobic010G205300 Sobic010G205300 Sobic010G080200--Sobic010G205300 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G047400 Sobic001G047400 Sobic001G051200--Sobic001G047400 Sobic010G000900 Sobic010G000900 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic009G238800--Sobic010G080200 Sobic006G232000 Sobic006G232000 Sobic009G238800--Sobic006G232000 Sobic009G238800--Sobic006G217700 Sobic009G238800--Sobic001G033500 Sobic002G376300 Sobic002G376300 Sobic009G238800--Sobic002G376300 Sobic006G148200 Sobic006G148200 Sobic009G238800--Sobic006G148200 Sobic001G048700 Sobic001G048700 Sobic009G238800--Sobic001G048700 Sobic001G067900 Sobic001G067900 Sobic009G238800--Sobic001G067900 Sobic001G206900 Sobic001G206900 Sobic009G238800--Sobic001G206900 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic001G054200 Sobic001G054200 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic006G217700--Sobic001G057800 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic001G201500 Sobic001G201500 Sobic005G155700--Sobic001G201500 Sobic010G002400 Sobic010G002400 Sobic005G155700--Sobic010G002400 Sobic006G044600 Sobic006G044600 Sobic005G155700--Sobic006G044600 Sobic005G155700--Sobic010G080200 Sobic010G228500 Sobic010G228500 Sobic005G155700--Sobic010G228500 Sobic002G300700 Sobic002G300700 Sobic005G155700--Sobic002G300700 Sobic004G358600 Sobic004G358600 Sobic005G155700--Sobic004G358600 Sobic003G012200 Sobic003G012200 Sobic005G155700--Sobic003G012200 Sobic001G199100 Sobic001G199100 Sobic005G155700--Sobic001G199100 Sobic001G283200 Sobic001G283200 Sobic001G033500--Sobic001G283200 Sobic007G184500 Sobic007G184500 Sobic001G033500--Sobic007G184500 Sobic001G033500--Sobic006G148200 Sobic007G118000 Sobic007G118000 Sobic001G033500--Sobic007G118000 Sobic001G085100 Sobic001G085100 Sobic001G033500--Sobic001G085100 Sobic010G073100 Sobic010G073100 Sobic001G033500--Sobic010G073100 Sobic001G458700 Sobic001G458700 Sobic001G033500--Sobic001G458700 Sobic002G113800 Sobic002G113800 Sobic001G033500--Sobic002G113800 Sobic001G033500--Sobic003G012200 Sobic001G057800--Sobic001G323000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic002G385900 Sobic002G385900 Sobic001G057800--Sobic002G385900 Sobic001G158500 Sobic001G158500 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic001G057800--Sobic010G000900 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic009G054700 Sobic009G054700 Sobic002G202400--Sobic009G054700 Sobic002G202400--Sobic009G238800 Sobic002G202400--Sobic010G080200 Sobic002G202400--Sobic001G048700 Sobic002G202400--Sobic002G281300 Sobic002G202400--Sobic003G007500 Sobic002G132300 Sobic002G132300 Sobic002G202400--Sobic002G132300 Sobic002G202400--Sobic002G376300 Sobic003G005200 Sobic003G005200 Sobic002G202400--Sobic003G005200 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic010G205300--Sobic001G067900
Octagon: transcription factors


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