Gene annotation
Transcriptome id Sobic.002G202400.1
Synonym Sb02g024730
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5XCU2
Pfam PF04857
Panther DB PTHR10797
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT2G32070 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os09g24990.2 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a046992
Brachypodium KQJ90246
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G202400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
2 Sobic.009G238800 expressed protein -
3 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
4 Sobic.001G048700 TBC domain containing protein, expressed -
5 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
6 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
8 Sobic.002G376300 FYVE zinc finger family protein, expressed -
9 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
10 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
11 Sobic.009G028800 OsFBX115 - F-box domain containing protein, expressed -
12 Sobic.002G366900 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
14 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
15 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
16 Sobic.010G034500 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
18 Sobic.008G142700 expressed protein -
19 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
20 Sobic.001G117300 expressed protein -


Gene co-expression network
sample Sobic002G202400 Sobic002G202400 Sobic009G054700 Sobic009G054700 Sobic002G202400--Sobic009G054700 Sobic009G238800 Sobic009G238800 Sobic002G202400--Sobic009G238800 Sobic010G080200 Sobic010G080200 Sobic002G202400--Sobic010G080200 Sobic001G048700 Sobic001G048700 Sobic002G202400--Sobic001G048700 Sobic002G281300 Sobic002G281300 Sobic002G202400--Sobic002G281300 Sobic003G007500 Sobic003G007500 Sobic002G202400--Sobic003G007500 Sobic002G132300 Sobic002G132300 Sobic002G202400--Sobic002G132300 Sobic002G376300 Sobic002G376300 Sobic002G202400--Sobic002G376300 Sobic003G005200 Sobic003G005200 Sobic002G202400--Sobic003G005200 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic009G054700--Sobic002G132300 Sobic010G168600 Sobic010G168600 Sobic009G054700--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic009G054700--Sobic002G256300 Sobic009G054700--Sobic002G202400 Sobic004G034400 Sobic004G034400 Sobic009G054700--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic004G104900 Sobic004G104900 Sobic009G054700--Sobic004G104900 Sobic009G238800--Sobic010G080200 Sobic006G232000 Sobic006G232000 Sobic009G238800--Sobic006G232000 Sobic006G217700 Sobic006G217700 Sobic009G238800--Sobic006G217700 Sobic001G033500 Sobic001G033500 Sobic009G238800--Sobic001G033500 Sobic009G238800--Sobic002G376300 Sobic006G148200 Sobic006G148200 Sobic009G238800--Sobic006G148200 Sobic009G238800--Sobic001G048700 Sobic001G067900 Sobic001G067900 Sobic009G238800--Sobic001G067900 Sobic001G206900 Sobic001G206900 Sobic009G238800--Sobic001G206900 Sobic001G051200 Sobic001G051200 Sobic010G080200--Sobic001G051200 Sobic010G080200--Sobic009G238800 Sobic010G080200--Sobic002G281300 Sobic010G080200--Sobic006G217700 Sobic005G155700 Sobic005G155700 Sobic010G080200--Sobic005G155700 Sobic010G080200--Sobic001G033500 Sobic001G057800 Sobic001G057800 Sobic010G080200--Sobic001G057800 Sobic010G080200--Sobic002G202400 Sobic010G205300 Sobic010G205300 Sobic010G080200--Sobic010G205300 Sobic001G048700--Sobic003G007500 Sobic001G048700--Sobic006G148200 Sobic002G296300 Sobic002G296300 Sobic001G048700--Sobic002G296300 Sobic001G048700--Sobic002G376300 Sobic009G228700 Sobic009G228700 Sobic001G048700--Sobic009G228700 Sobic001G048700--Sobic009G238800 Sobic004G072800 Sobic004G072800 Sobic001G048700--Sobic004G072800 Sobic001G323000 Sobic001G323000 Sobic001G048700--Sobic001G323000 Sobic007G118000 Sobic007G118000 Sobic001G048700--Sobic007G118000 Sobic003G261400 Sobic003G261400 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic001G054200 Sobic001G054200 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic010G083700 Sobic010G083700 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic003G007500--Sobic001G051200 Sobic003G007500--Sobic004G072800 Sobic003G007500--Sobic004G104900 Sobic003G007500--Sobic002G281300 Sobic002G378200 Sobic002G378200 Sobic002G132300--Sobic002G378200 Sobic002G132300--Sobic009G054700 Sobic004G007300 Sobic004G007300 Sobic002G132300--Sobic004G007300 Sobic001G028400 Sobic001G028400 Sobic002G132300--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic002G132300--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic002G132300--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic002G132300--Sobic001G512900 Sobic008G174300 Sobic008G174300 Sobic002G132300--Sobic008G174300 Sobic010G033400 Sobic010G033400 Sobic002G132300--Sobic010G033400 Sobic002G376300--Sobic009G238800 Sobic002G376300--Sobic001G048700 Sobic003G219500 Sobic003G219500 Sobic002G376300--Sobic003G219500 Sobic002G376300--Sobic002G378200 Sobic002G376300--Sobic007G118000 Sobic002G376300--Sobic009G054700 Sobic007G115900 Sobic007G115900 Sobic002G376300--Sobic007G115900 Sobic002G376300--Sobic006G148200 Sobic002G376300--Sobic001G067900 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic009G160600 Sobic009G160600 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G038600 Sobic003G038600 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic009G058500 Sobic009G058500 Sobic003G005200--Sobic009G058500
Octagon: transcription factors


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