Gene annotation
Transcriptome id Sobic.009G054700.1
Synonym Sb09g004620
Functional annotation macrophage erythroblast attacher, putative, expressed
UniProt C5Z0N5 , A0A120GUQ3
Pfam PF13445 PF10607
Panther DB PTHR12170 PTHR12170:SF2
NCBI CDD KOG0396; Uncharacterized conserved protein
KEGG Orthology K18624; MAEA, macrophage erythroblast attacher
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55070 : LisH/CRA/RING-U-box domains-containing protein
RAP-DB (Rice) LOC_Os05g06760.1 : macrophage erythroblast attacher, putative, expressed
MaizeGDB (Corn) Zm00025a042948
Brachypodium KQK07355 , KQK07354
Barley HORVU1Hr1G023670.1
Wheat TraesCS1B02G131000 , TraesCS1D02G109700 , TraesCS1A02G105500
Populus -


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cDNA sequences
Sobic.009G054700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
2 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
3 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
6 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
7 Sobic.010G067700 expressed protein -
8 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
9 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
10 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
11 Sobic.001G124300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G058900 BSD domain containing protein, expressed -
13 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
14 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
16 Sobic.007G002200 glycine-rich RNA-binding protein 7, putative, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
17 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
18 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
19 Sobic.001G078500 expressed protein -
20 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic009G054700 Sobic009G054700 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic010G168600 Sobic010G168600 Sobic009G054700--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic004G034400 Sobic004G034400 Sobic009G054700--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic004G104900 Sobic004G104900 Sobic009G054700--Sobic004G104900 Sobic001G031200--Sobic009G054700 Sobic009G028800 Sobic009G028800 Sobic001G031200--Sobic009G028800 Sobic003G000800 Sobic003G000800 Sobic001G031200--Sobic003G000800 Sobic001G149700 Sobic001G149700 Sobic001G031200--Sobic001G149700 Sobic001G371300 Sobic001G371300 Sobic001G031200--Sobic001G371300 Sobic001G031200--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic001G031200--Sobic010G083700 Sobic004G006300 Sobic004G006300 Sobic001G031200--Sobic004G006300 Sobic003G250500 Sobic003G250500 Sobic001G031200--Sobic003G250500 Sobic002G378200 Sobic002G378200 Sobic002G132300--Sobic002G378200 Sobic002G132300--Sobic009G054700 Sobic004G007300 Sobic004G007300 Sobic002G132300--Sobic004G007300 Sobic001G028400 Sobic001G028400 Sobic002G132300--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic002G132300--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic002G132300--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic002G132300--Sobic001G512900 Sobic008G174300 Sobic008G174300 Sobic002G132300--Sobic008G174300 Sobic010G033400 Sobic010G033400 Sobic002G132300--Sobic010G033400 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic009G246950 Sobic009G246950 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic006G263900 Sobic006G263900 Sobic010G168600--Sobic006G263900 Sobic003G007500 Sobic003G007500 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic002G256300--Sobic006G263900 Sobic002G256300--Sobic009G171700 Sobic002G202400--Sobic009G054700 Sobic009G238800 Sobic009G238800 Sobic002G202400--Sobic009G238800 Sobic010G080200 Sobic010G080200 Sobic002G202400--Sobic010G080200 Sobic001G048700 Sobic001G048700 Sobic002G202400--Sobic001G048700 Sobic002G281300 Sobic002G281300 Sobic002G202400--Sobic002G281300 Sobic002G202400--Sobic003G007500 Sobic002G202400--Sobic002G132300 Sobic002G376300 Sobic002G376300 Sobic002G202400--Sobic002G376300 Sobic003G005200 Sobic003G005200 Sobic002G202400--Sobic003G005200 Sobic010G042900 Sobic010G042900 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic010G067700--Sobic008G128600 Sobic010G067700--Sobic009G054700 Sobic010G067700--Sobic001G136900 Sobic010G071200 Sobic010G071200 Sobic010G067700--Sobic010G071200 Sobic010G067700--Sobic002G256300 Sobic010G067700--Sobic001G512900 Sobic010G067700--Sobic010G168600 Sobic001G083600 Sobic001G083600 Sobic010G067700--Sobic001G083600 Sobic003G146900 Sobic003G146900 Sobic010G067700--Sobic003G146900 Sobic008G128600--Sobic010G067700 Sobic008G128600--Sobic009G054700 Sobic008G128600--Sobic001G512900 Sobic008G128600--Sobic003G250500 Sobic001G131800 Sobic001G131800 Sobic008G128600--Sobic001G131800 Sobic008G128600--Sobic009G178600 Sobic008G128600--Sobic001G083600 Sobic009G198100 Sobic009G198100 Sobic008G128600--Sobic009G198100 Sobic006G252300 Sobic006G252300 Sobic008G128600--Sobic006G252300 Sobic004G104900--Sobic002G256300 Sobic004G104900--Sobic010G083700 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic004G104900--Sobic003G007500 Sobic004G066200 Sobic004G066200 Sobic004G104900--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic004G104900--Sobic009G228700 Sobic001G007200 Sobic001G007200 Sobic004G104900--Sobic001G007200 Sobic004G104900--Sobic009G246950
Octagon: transcription factors


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