Gene annotation
Transcriptome id Sobic.001G124300.1
Synonym Sb01g010940
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WNT9
Pfam -
Panther DB PTHR33874 PTHR33874:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G44770 : -
RAP-DB (Rice) LOC_Os03g49490.1 : expressed protein
MaizeGDB (Corn) Zm00025a007747
Brachypodium KQK13647
Barley HORVU4Hr1G006210.1 , HORVU4Hr1G006210.2
Wheat TraesCS4B02G039100 , TraesCS4A02G274700 , TraesCS4A02G274700 , TraesCS4D02G036200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G124300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
2 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.010G067700 expressed protein -
5 Sobic.009G172400 VHS and GAT domain containing protein, expressed -
6 Sobic.004G349800 expressed protein -
7 Sobic.010G264200 UPF0183 protein, putative, expressed -
8 Sobic.004G094300 protein kinase domain containing protein, expressed K04424: ZAK, sterile alpha motif and leucine zipper containing kinase AZK
9 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
10 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
12 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
13 Sobic.002G052900 cytidylyltransferase domain containing protein, expressed K02201: pantetheine-phosphate adenylyltransferase
14 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
15 Sobic.002G352600 expressed protein -
16 Sobic.001G078500 expressed protein -
17 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
18 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
19 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.006G194500 expressed protein -


Gene co-expression network
sample Sobic001G124300 Sobic001G124300 Sobic009G054700 Sobic009G054700 Sobic001G124300--Sobic009G054700 Sobic004G320000 Sobic004G320000 Sobic001G124300--Sobic004G320000 Sobic010G168600 Sobic010G168600 Sobic001G124300--Sobic010G168600 Sobic010G067700 Sobic010G067700 Sobic001G124300--Sobic010G067700 Sobic009G172400 Sobic009G172400 Sobic001G124300--Sobic009G172400 Sobic004G349800 Sobic004G349800 Sobic001G124300--Sobic004G349800 Sobic010G264200 Sobic010G264200 Sobic001G124300--Sobic010G264200 Sobic004G094300 Sobic004G094300 Sobic001G124300--Sobic004G094300 Sobic004G034400 Sobic004G034400 Sobic001G124300--Sobic004G034400 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic009G054700--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic009G054700--Sobic004G034400 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic004G104900 Sobic004G104900 Sobic009G054700--Sobic004G104900 Sobic008G174300 Sobic008G174300 Sobic004G320000--Sobic008G174300 Sobic004G320000--Sobic004G349800 Sobic001G512900 Sobic001G512900 Sobic004G320000--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic004G320000--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic004G320000--Sobic010G260500 Sobic004G320000--Sobic001G124300 Sobic009G027000 Sobic009G027000 Sobic004G320000--Sobic009G027000 Sobic004G203100 Sobic004G203100 Sobic004G320000--Sobic004G203100 Sobic003G333600 Sobic003G333600 Sobic004G320000--Sobic003G333600 Sobic010G083700 Sobic010G083700 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic009G246950 Sobic009G246950 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic006G263900 Sobic006G263900 Sobic010G168600--Sobic006G263900 Sobic003G007500 Sobic003G007500 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic010G067700--Sobic008G128600 Sobic010G067700--Sobic009G054700 Sobic001G136900 Sobic001G136900 Sobic010G067700--Sobic001G136900 Sobic010G071200 Sobic010G071200 Sobic010G067700--Sobic010G071200 Sobic010G067700--Sobic002G256300 Sobic010G067700--Sobic001G512900 Sobic010G067700--Sobic010G168600 Sobic001G083600 Sobic001G083600 Sobic010G067700--Sobic001G083600 Sobic003G146900 Sobic003G146900 Sobic010G067700--Sobic003G146900 Sobic009G172400--Sobic003G333600 Sobic009G249200 Sobic009G249200 Sobic009G172400--Sobic009G249200 Sobic005G105000 Sobic005G105000 Sobic009G172400--Sobic005G105000 Sobic009G138100 Sobic009G138100 Sobic009G172400--Sobic009G138100 Sobic004G267300 Sobic004G267300 Sobic009G172400--Sobic004G267300 Sobic003G408500 Sobic003G408500 Sobic009G172400--Sobic003G408500 Sobic004G205600 Sobic004G205600 Sobic009G172400--Sobic004G205600 Sobic001G351700 Sobic001G351700 Sobic009G172400--Sobic001G351700 Sobic010G145900 Sobic010G145900 Sobic009G172400--Sobic010G145900 Sobic004G349800--Sobic004G320000 Sobic004G349800--Sobic004G203100 Sobic004G349800--Sobic003G146900 Sobic004G349800--Sobic010G168600 Sobic004G349800--Sobic001G124300 Sobic004G349800--Sobic002G256300 Sobic004G349800--Sobic009G171700 Sobic004G349800--Sobic001G512900 Sobic004G349800--Sobic002G352700 Sobic007G024700 Sobic007G024700 Sobic010G264200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic010G264200--Sobic010G130200 Sobic002G382600 Sobic002G382600 Sobic010G264200--Sobic002G382600 Sobic010G264200--Sobic009G249200 Sobic001G124200 Sobic001G124200 Sobic010G264200--Sobic001G124200 Sobic010G020300 Sobic010G020300 Sobic010G264200--Sobic010G020300 Sobic001G466700 Sobic001G466700 Sobic010G264200--Sobic001G466700 Sobic001G436900 Sobic001G436900 Sobic010G264200--Sobic001G436900 Sobic006G083600 Sobic006G083600 Sobic010G264200--Sobic006G083600 Sobic009G205200 Sobic009G205200 Sobic004G094300--Sobic009G205200 Sobic002G350300 Sobic002G350300 Sobic004G094300--Sobic002G350300 Sobic008G165000 Sobic008G165000 Sobic004G094300--Sobic008G165000 Sobic009G228700 Sobic009G228700 Sobic004G094300--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic004G094300--Sobic004G121100 Sobic007G207400 Sobic007G207400 Sobic004G094300--Sobic007G207400 Sobic004G066200 Sobic004G066200 Sobic004G094300--Sobic004G066200 Sobic010G243400 Sobic010G243400 Sobic004G094300--Sobic010G243400 Sobic004G003401 Sobic004G003401 Sobic004G094300--Sobic004G003401 Sobic010G042900 Sobic010G042900 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic004G034400--Sobic001G478300 Sobic004G034400--Sobic002G132300 Sobic004G034400--Sobic004G320000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.