Gene annotation
Transcriptome id Sobic.004G320000.2,Sobic.004G320000.1
Synonym Sb04g035060
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XTN7 , A0A1Z5RPY9
Pfam -
Panther DB PTHR33874 PTHR33874:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49710 : -
RAP-DB (Rice) LOC_Os02g54080.1 : expressed protein
MaizeGDB (Corn) Zm00025a022361
Brachypodium KQK02049 , KQK02050 , KQK02051
Barley -
Wheat TraesCS6A02G340500 , TraesCS6A02G340500 , TraesCS6B02G371800 , TraesCS6B02G371800
Populus -


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cDNA sequences
Sobic.004G320000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
2 Sobic.004G349800 expressed protein -
3 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
4 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
5 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
6 Sobic.001G124300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
8 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
9 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
10 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
11 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
12 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.007G002200 glycine-rich RNA-binding protein 7, putative, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
14 Sobic.010G067700 expressed protein -
15 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
16 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
17 Sobic.002G346900 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
18 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
19 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
20 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family


Gene co-expression network
sample Sobic004G320000 Sobic004G320000 Sobic008G174300 Sobic008G174300 Sobic004G320000--Sobic008G174300 Sobic004G349800 Sobic004G349800 Sobic004G320000--Sobic004G349800 Sobic001G512900 Sobic001G512900 Sobic004G320000--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic004G320000--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic004G320000--Sobic010G260500 Sobic001G124300 Sobic001G124300 Sobic004G320000--Sobic001G124300 Sobic009G027000 Sobic009G027000 Sobic004G320000--Sobic009G027000 Sobic004G203100 Sobic004G203100 Sobic004G320000--Sobic004G203100 Sobic003G333600 Sobic003G333600 Sobic004G320000--Sobic003G333600 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic008G174300--Sobic010G260500 Sobic010G033400 Sobic010G033400 Sobic008G174300--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic008G174300--Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic009G198100 Sobic009G198100 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic004G349800--Sobic004G320000 Sobic004G349800--Sobic004G203100 Sobic003G146900 Sobic003G146900 Sobic004G349800--Sobic003G146900 Sobic010G168600 Sobic010G168600 Sobic004G349800--Sobic010G168600 Sobic004G349800--Sobic001G124300 Sobic002G256300 Sobic002G256300 Sobic004G349800--Sobic002G256300 Sobic009G171700 Sobic009G171700 Sobic004G349800--Sobic009G171700 Sobic004G349800--Sobic001G512900 Sobic002G352700 Sobic002G352700 Sobic004G349800--Sobic002G352700 Sobic010G071200 Sobic010G071200 Sobic001G512900--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G512900--Sobic010G055500 Sobic008G142700 Sobic008G142700 Sobic001G512900--Sobic008G142700 Sobic001G512900--Sobic008G174300 Sobic001G083600 Sobic001G083600 Sobic001G512900--Sobic001G083600 Sobic001G390500 Sobic001G390500 Sobic001G512900--Sobic001G390500 Sobic001G149700 Sobic001G149700 Sobic001G512900--Sobic001G149700 Sobic003G127400 Sobic003G127400 Sobic001G512900--Sobic003G127400 Sobic009G246950 Sobic009G246950 Sobic001G512900--Sobic009G246950 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic001G478300--Sobic010G055500 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400 Sobic009G054700 Sobic009G054700 Sobic001G124300--Sobic009G054700 Sobic001G124300--Sobic004G320000 Sobic001G124300--Sobic010G168600 Sobic010G067700 Sobic010G067700 Sobic001G124300--Sobic010G067700 Sobic009G172400 Sobic009G172400 Sobic001G124300--Sobic009G172400 Sobic001G124300--Sobic004G349800 Sobic010G264200 Sobic010G264200 Sobic001G124300--Sobic010G264200 Sobic004G094300 Sobic004G094300 Sobic001G124300--Sobic004G094300 Sobic004G034400 Sobic004G034400 Sobic001G124300--Sobic004G034400 Sobic006G122400 Sobic006G122400 Sobic009G027000--Sobic006G122400 Sobic005G181000 Sobic005G181000 Sobic009G027000--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic010G078100 Sobic010G078100 Sobic009G027000--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic009G027000--Sobic007G130600 Sobic001G156100 Sobic001G156100 Sobic009G027000--Sobic001G156100 Sobic009G027000--Sobic007G078000 Sobic009G027000--Sobic004G320000 Sobic004G203100--Sobic010G168600 Sobic003G007500 Sobic003G007500 Sobic004G203100--Sobic003G007500 Sobic004G203100--Sobic002G352700 Sobic004G203100--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic004G203100--Sobic008G180900 Sobic010G238700 Sobic010G238700 Sobic004G203100--Sobic010G238700 Sobic004G203100--Sobic009G054700 Sobic010G083700 Sobic010G083700 Sobic004G203100--Sobic010G083700 Sobic010G058900 Sobic010G058900 Sobic004G203100--Sobic010G058900 Sobic003G333600--Sobic007G078000 Sobic001G424700 Sobic001G424700 Sobic003G333600--Sobic001G424700 Sobic003G333600--Sobic001G451000 Sobic003G333600--Sobic010G260500 Sobic004G196700 Sobic004G196700 Sobic003G333600--Sobic004G196700 Sobic001G372700 Sobic001G372700 Sobic003G333600--Sobic001G372700 Sobic003G333600--Sobic007G185900 Sobic004G153600 Sobic004G153600 Sobic003G333600--Sobic004G153600 Sobic003G333600--Sobic005G149500
Octagon: transcription factors


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