Gene annotation
Transcriptome id Sobic.008G128600.1
Synonym SAR2, ATSAR2, ATSARA1C, ASAR1
Functional annotation miro, putative, expressed
UniProt C6JS77
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF165
NCBI CDD KOG0077; Vesicle coat complex COPII, GTPase subunit SAR1
KEGG Orthology K07953; GTP-binding protein SAR1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT4G02080 : secretion-associated RAS super family 2
RAP-DB (Rice) LOC_Os12g37360.1 : miro, putative, expressed
MaizeGDB (Corn) Zm00025a036193 , Zm00025a024454 , Zm00025a029629
Brachypodium KQK03638 , KQJ86341 , KQK04230 , KQK04231
Barley HORVU5Hr1G023140.4 , HORVU5Hr1G023140.1 , HORVU5Hr1G023140.3 , HORVU5Hr1G023140.2 , HORVU3Hr1G035000.1 , HORVU3Hr1G035000.3 , HORVU3Hr1G035000.2 , HORVU3Hr1G035000.5 , HORVU3Hr1G035000.4 , HORVU3Hr1G045150.4 , HORVU3Hr1G045150.5 , HORVU3Hr1G045150.1 , HORVU3Hr1G045150.3
Wheat TraesCS3A02G193800 , TraesCS3A02G193800 , TraesCS3D02G179300 , TraesCS3D02G179300 , TraesCS3A02G172900 , TraesCS5A02G089200 , TraesCS3B02G203800 , TraesCS5D02G101300 , TraesCS3B02G221700 , TraesCS3D02G196200 , TraesCS5B02G095200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G067700 expressed protein -
2 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
3 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
4 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
5 Sobic.001G131800 expressed protein K15186: ELL-associated factor
6 Sobic.009G178600 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
7 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
8 Sobic.009G198100 expressed protein -
9 Sobic.006G252300 BSD domain-containing protein, putative, expressed -
10 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
11 Sobic.004G186000 salt tolerant protein, putative, expressed -
12 Sobic.002G346900 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
13 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
14 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
15 Sobic.004G205600 bromodomain domain containing protein, expressed -
16 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
17 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
18 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.003G146900 lipase class 3 family protein, putative, expressed -
20 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -


Gene co-expression network
sample Sobic008G128600 Sobic008G128600 Sobic010G067700 Sobic010G067700 Sobic008G128600--Sobic010G067700 Sobic009G054700 Sobic009G054700 Sobic008G128600--Sobic009G054700 Sobic001G512900 Sobic001G512900 Sobic008G128600--Sobic001G512900 Sobic003G250500 Sobic003G250500 Sobic008G128600--Sobic003G250500 Sobic001G131800 Sobic001G131800 Sobic008G128600--Sobic001G131800 Sobic009G178600 Sobic009G178600 Sobic008G128600--Sobic009G178600 Sobic001G083600 Sobic001G083600 Sobic008G128600--Sobic001G083600 Sobic009G198100 Sobic009G198100 Sobic008G128600--Sobic009G198100 Sobic006G252300 Sobic006G252300 Sobic008G128600--Sobic006G252300 Sobic010G067700--Sobic008G128600 Sobic010G067700--Sobic009G054700 Sobic001G136900 Sobic001G136900 Sobic010G067700--Sobic001G136900 Sobic010G071200 Sobic010G071200 Sobic010G067700--Sobic010G071200 Sobic002G256300 Sobic002G256300 Sobic010G067700--Sobic002G256300 Sobic010G067700--Sobic001G512900 Sobic010G168600 Sobic010G168600 Sobic010G067700--Sobic010G168600 Sobic010G067700--Sobic001G083600 Sobic003G146900 Sobic003G146900 Sobic010G067700--Sobic003G146900 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic009G054700--Sobic010G168600 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic004G034400 Sobic004G034400 Sobic009G054700--Sobic004G034400 Sobic009G054700--Sobic010G067700 Sobic009G054700--Sobic008G128600 Sobic004G104900 Sobic004G104900 Sobic009G054700--Sobic004G104900 Sobic001G512900--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G512900--Sobic010G055500 Sobic008G142700 Sobic008G142700 Sobic001G512900--Sobic008G142700 Sobic008G174300 Sobic008G174300 Sobic001G512900--Sobic008G174300 Sobic001G512900--Sobic001G083600 Sobic001G390500 Sobic001G390500 Sobic001G512900--Sobic001G390500 Sobic001G149700 Sobic001G149700 Sobic001G512900--Sobic001G149700 Sobic003G127400 Sobic003G127400 Sobic001G512900--Sobic003G127400 Sobic009G246950 Sobic009G246950 Sobic001G512900--Sobic009G246950 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic001G131800--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic010G033400 Sobic010G033400 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G107500 Sobic001G107500 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic003G359300 Sobic003G359300 Sobic001G131800--Sobic003G359300 Sobic004G006300 Sobic004G006300 Sobic009G178600--Sobic004G006300 Sobic009G178600--Sobic001G083600 Sobic009G178600--Sobic008G128600 Sobic003G202800 Sobic003G202800 Sobic009G178600--Sobic003G202800 Sobic010G190600 Sobic010G190600 Sobic009G178600--Sobic010G190600 Sobic002G010300 Sobic002G010300 Sobic009G178600--Sobic002G010300 Sobic004G283000 Sobic004G283000 Sobic009G178600--Sobic004G283000 Sobic009G178600--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic009G178600--Sobic006G209500 Sobic001G083600--Sobic001G390500 Sobic001G083600--Sobic010G071200 Sobic004G263900 Sobic004G263900 Sobic001G083600--Sobic004G263900 Sobic001G083600--Sobic001G512900 Sobic001G083600--Sobic010G055500 Sobic001G083600--Sobic008G174300 Sobic002G084300 Sobic002G084300 Sobic001G083600--Sobic002G084300 Sobic001G056200 Sobic001G056200 Sobic001G083600--Sobic001G056200 Sobic010G211300 Sobic010G211300 Sobic001G083600--Sobic010G211300 Sobic007G118200 Sobic007G118200 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic006G252300--Sobic001G281600 Sobic002G309800 Sobic002G309800 Sobic006G252300--Sobic002G309800 Sobic007G078500 Sobic007G078500 Sobic006G252300--Sobic007G078500 Sobic004G121100 Sobic004G121100 Sobic006G252300--Sobic004G121100 Sobic004G205600 Sobic004G205600 Sobic006G252300--Sobic004G205600 Sobic006G252300--Sobic008G128600 Sobic006G200600 Sobic006G200600 Sobic006G252300--Sobic006G200600 Sobic006G252300--Sobic008G062000 Sobic003G084700 Sobic003G084700 Sobic006G252300--Sobic003G084700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.