Gene annotation
Transcriptome id Sobic.009G178600.1
Synonym Sb09g023880, ARFA1F, ATARFA1F
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5YZX5
Pfam PF09439
Panther DB PTHR11711 PTHR11711:SF181
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07937; ADP-ribosylation factor 1/2 K07977Arf/Sar family, other
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10630 : ADP-ribosylation factor A1F
RAP-DB (Rice) LOC_Os05g41060.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a044059 , Zm00025a016469 , Zm00025a035278 , Zm00025a027123 , Zm00025a013401 , Zm00025a045417 , Zm00025a039804
Brachypodium PNT73921 , PNT73073 , KQK12518 , KQJ92478 , KQK20331 , KQK20330 , KQK20333 , KQK20332 , KQK20335 , KQK10268 , KQK10269
Barley HORVU2Hr1G054760.1 , HORVU2Hr1G054760.2 , HORVU2Hr1G054760.3 , HORVU2Hr1G054760.4 , HORVU1Hr1G068790.8 , HORVU1Hr1G068790.3 , HORVU1Hr1G068790.5 , HORVU1Hr1G068790.4 , HORVU1Hr1G068790.7 , HORVU1Hr1G068790.6 , HORVU5Hr1G111500.3 , HORVU5Hr1G111500.2 , HORVU5Hr1G111500.1 , HORVU5Hr1G111500.5 , HORVU5Hr1G111500.4 , HORVU3Hr1G079700.2 , HORVU3Hr1G079700.3 , HORVU3Hr1G079700.1 , HORVU3Hr1G079700.6 , HORVU3Hr1G079700.7 , HORVU3Hr1G079700.4 , HORVU3Hr1G079700.5 , HORVU3Hr1G079700.8 , HORVU5Hr1G045440.4 , HORVU5Hr1G045440.5 , HORVU5Hr1G045440.6 , HORVU5Hr1G045440.1 , HORVU5Hr1G045440.2 , HORVU5Hr1G045440.3 , HORVU0Hr1G027130.5 , HORVU0Hr1G027130.4 , HORVU0Hr1G027130.6 , HORVU0Hr1G027130.1 , HORVU0Hr1G027130.3 , HORVU0Hr1G027130.2 , HORVU1Hr1G068790.2 , HORVU2Hr1G054780.4 , HORVU2Hr1G054780.5 , HORVU2Hr1G054780.2 , HORVU2Hr1G054780.3 , HORVU2Hr1G054780.1 , HORVU1Hr1G068790.1
Wheat TraesCS2D02G244900 , TraesCS2D02G244900 , TraesCS3A02G337300 , TraesCS3A02G337300 , TraesCS1B02G317000 , TraesCS3D02G330500 , TraesCS3D02G330500 , TraesCS5A02G467400 , TraesCS1A02G306200 , TraesCS5A02G142100 , TraesCS5B02G140900 , TraesCS5D02G150000 , TraesCS5D02G150000 , TraesCS2A02G235500 , TraesCS5D02G480200 , TraesCS5B02G479100 , TraesCS1D02G305900 , TraesCS3B02G368600 , TraesCS3B02G368600
Populus -


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cDNA sequences
Sobic.009G178600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
2 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
3 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
4 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
5 Sobic.010G190600 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
6 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
7 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
8 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
9 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
10 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
11 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
12 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
13 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
14 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
15 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
16 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
17 Sobic.009G117400 protein kinase domain containing protein, expressed -
18 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
19 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
20 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter


Gene co-expression network
sample Sobic009G178600 Sobic009G178600 Sobic004G006300 Sobic004G006300 Sobic009G178600--Sobic004G006300 Sobic001G083600 Sobic001G083600 Sobic009G178600--Sobic001G083600 Sobic008G128600 Sobic008G128600 Sobic009G178600--Sobic008G128600 Sobic003G202800 Sobic003G202800 Sobic009G178600--Sobic003G202800 Sobic010G190600 Sobic010G190600 Sobic009G178600--Sobic010G190600 Sobic002G010300 Sobic002G010300 Sobic009G178600--Sobic002G010300 Sobic004G283000 Sobic004G283000 Sobic009G178600--Sobic004G283000 Sobic004G034400 Sobic004G034400 Sobic009G178600--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic009G178600--Sobic006G209500 Sobic004G006300--Sobic009G178600 Sobic009G117300 Sobic009G117300 Sobic004G006300--Sobic009G117300 Sobic006G254700 Sobic006G254700 Sobic004G006300--Sobic006G254700 Sobic004G006300--Sobic006G209500 Sobic004G348100 Sobic004G348100 Sobic004G006300--Sobic004G348100 Sobic001G428400 Sobic001G428400 Sobic004G006300--Sobic001G428400 Sobic009G117400 Sobic009G117400 Sobic004G006300--Sobic009G117400 Sobic001G111366 Sobic001G111366 Sobic004G006300--Sobic001G111366 Sobic001G028700 Sobic001G028700 Sobic004G006300--Sobic001G028700 Sobic001G390500 Sobic001G390500 Sobic001G083600--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G083600--Sobic010G071200 Sobic004G263900 Sobic004G263900 Sobic001G083600--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic001G083600--Sobic001G512900 Sobic010G055500 Sobic010G055500 Sobic001G083600--Sobic010G055500 Sobic008G174300 Sobic008G174300 Sobic001G083600--Sobic008G174300 Sobic002G084300 Sobic002G084300 Sobic001G083600--Sobic002G084300 Sobic001G056200 Sobic001G056200 Sobic001G083600--Sobic001G056200 Sobic010G211300 Sobic010G211300 Sobic001G083600--Sobic010G211300 Sobic010G067700 Sobic010G067700 Sobic008G128600--Sobic010G067700 Sobic009G054700 Sobic009G054700 Sobic008G128600--Sobic009G054700 Sobic008G128600--Sobic001G512900 Sobic003G250500 Sobic003G250500 Sobic008G128600--Sobic003G250500 Sobic001G131800 Sobic001G131800 Sobic008G128600--Sobic001G131800 Sobic008G128600--Sobic009G178600 Sobic008G128600--Sobic001G083600 Sobic009G198100 Sobic009G198100 Sobic008G128600--Sobic009G198100 Sobic006G252300 Sobic006G252300 Sobic008G128600--Sobic006G252300 Sobic006G088100 Sobic006G088100 Sobic003G202800--Sobic006G088100 Sobic001G107500 Sobic001G107500 Sobic003G202800--Sobic001G107500 Sobic004G271900 Sobic004G271900 Sobic003G202800--Sobic004G271900 Sobic008G034600 Sobic008G034600 Sobic003G202800--Sobic008G034600 Sobic003G437500 Sobic003G437500 Sobic003G202800--Sobic003G437500 Sobic006G128800 Sobic006G128800 Sobic003G202800--Sobic006G128800 Sobic002G157300 Sobic002G157300 Sobic003G202800--Sobic002G157300 Sobic007G011400 Sobic007G011400 Sobic003G202800--Sobic007G011400 Sobic007G205800 Sobic007G205800 Sobic003G202800--Sobic007G205800 Sobic002G077200 Sobic002G077200 Sobic010G190600--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G190600--Sobic002G313300 Sobic004G256600 Sobic004G256600 Sobic010G190600--Sobic004G256600 Sobic009G231300 Sobic009G231300 Sobic010G190600--Sobic009G231300 Sobic009G000500 Sobic009G000500 Sobic010G190600--Sobic009G000500 Sobic009G135800 Sobic009G135800 Sobic010G190600--Sobic009G135800 Sobic010G190600--Sobic009G178600 Sobic006G128900 Sobic006G128900 Sobic010G190600--Sobic006G128900 Sobic003G258400 Sobic003G258400 Sobic010G190600--Sobic003G258400 Sobic007G026300 Sobic007G026300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic003G248500 Sobic003G248500 Sobic004G283000--Sobic003G248500 Sobic002G388200 Sobic002G388200 Sobic004G283000--Sobic002G388200 Sobic004G007300 Sobic004G007300 Sobic004G283000--Sobic004G007300 Sobic004G283000--Sobic004G350100 Sobic004G283000--Sobic008G174300 Sobic007G118200 Sobic007G118200 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic004G283000--Sobic006G173100 Sobic004G283000--Sobic002G157300 Sobic010G042900 Sobic010G042900 Sobic004G034400--Sobic010G042900 Sobic004G034400--Sobic002G010300 Sobic004G034400--Sobic009G054700 Sobic004G034400--Sobic006G209500 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic002G132300 Sobic002G132300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic006G209500--Sobic001G478300 Sobic006G209500--Sobic004G271900 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic006G209500--Sobic007G205800
Octagon: transcription factors


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