Gene annotation
Transcriptome id Sobic.009G117300.1
Synonym Sb09g018490
Functional annotation protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt C5YX81
Pfam PF00069
Panther DB PTHR27001 PTHR27001:SF50
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G18610 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os01g71000.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a037648
Brachypodium KQK06623 , KQK11417 , KQK11418
Barley HORVU1Hr1G058100.3 , HORVU1Hr1G058100.2 , HORVU1Hr1G058100.1 , HORVU1Hr1G058100.7 , HORVU1Hr1G058100.6 , HORVU1Hr1G058100.5 , HORVU1Hr1G058100.4 , HORVU1Hr1G058100.9 , HORVU1Hr1G058100.8 , HORVU3Hr1G099120.12 , HORVU3Hr1G099120.13 , HORVU3Hr1G099120.10 , HORVU3Hr1G099120.11 , HORVU3Hr1G099120.14 , HORVU1Hr1G058100.14 , HORVU3Hr1G099120.8 , HORVU3Hr1G099120.9 , HORVU3Hr1G099120.1 , HORVU3Hr1G099120.2 , HORVU3Hr1G099120.3 , HORVU3Hr1G099120.4 , HORVU3Hr1G099120.5 , HORVU3Hr1G099120.6 , HORVU3Hr1G099120.7 , HORVU1Hr1G058100.13 , HORVU1Hr1G058100.12 , HORVU1Hr1G058100.11 , HORVU1Hr1G058100.10 , HORVU1Hr1G058100.15
Wheat TraesCS1B02G247100 , TraesCS3D02G457400 , TraesCS3D02G457400 , TraesCS1A02G236600 , TraesCS1A02G236600 , TraesCS3B02G506600 , TraesCS1D02G235800 , TraesCS1D02G235800 , TraesCS3A02G463400 , TraesCS3A02G463400
Populus -


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cDNA sequences
Sobic.009G117300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G117400 protein kinase domain containing protein, expressed -
2 Sobic.004G271900 RMD5 homolog A, putative, expressed -
3 Sobic.009G225200 expressed protein -
4 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
5 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
6 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
7 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
8 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
9 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
10 Sobic.007G031800 expressed protein -
11 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
12 Sobic.003G440700 leucine rich repeat domain containing protein, putative, expressed -
13 Sobic.002G270300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
14 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
15 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
16 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
17 Sobic.001G347600 paramyosin, putative, expressed -
18 Sobic.003G258400 splicing factor-related, putative, expressed -
19 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
20 Sobic.007G071950 - -


Gene co-expression network
sample Sobic009G117300 Sobic009G117300 Sobic009G117400 Sobic009G117400 Sobic009G117300--Sobic009G117400 Sobic004G271900 Sobic004G271900 Sobic009G117300--Sobic004G271900 Sobic009G225200 Sobic009G225200 Sobic009G117300--Sobic009G225200 Sobic010G263800 Sobic010G263800 Sobic009G117300--Sobic010G263800 Sobic004G057400 Sobic004G057400 Sobic009G117300--Sobic004G057400 Sobic008G034600 Sobic008G034600 Sobic009G117300--Sobic008G034600 Sobic006G209500 Sobic006G209500 Sobic009G117300--Sobic006G209500 Sobic004G256600 Sobic004G256600 Sobic009G117300--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic009G117300--Sobic007G205800 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic003G093600 Sobic003G093600 Sobic004G271900--Sobic003G093600 Sobic004G271900--Sobic004G256600 Sobic007G011400 Sobic007G011400 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic004G271900--Sobic009G117300 Sobic009G225200--Sobic009G117300 Sobic009G225200--Sobic009G117400 Sobic005G015100 Sobic005G015100 Sobic009G225200--Sobic005G015100 Sobic001G043900 Sobic001G043900 Sobic009G225200--Sobic001G043900 Sobic003G258900 Sobic003G258900 Sobic009G225200--Sobic003G258900 Sobic009G225200--Sobic004G271900 Sobic004G348100 Sobic004G348100 Sobic009G225200--Sobic004G348100 Sobic003G442000 Sobic003G442000 Sobic009G225200--Sobic003G442000 Sobic009G015800 Sobic009G015800 Sobic009G225200--Sobic009G015800 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic010G263800--Sobic009G117400 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic001G090400 Sobic001G090400 Sobic004G057400--Sobic001G090400 Sobic004G205600 Sobic004G205600 Sobic004G057400--Sobic004G205600 Sobic004G057400--Sobic002G157300 Sobic009G000500 Sobic009G000500 Sobic004G057400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic004G057400--Sobic008G067600 Sobic006G128900 Sobic006G128900 Sobic004G057400--Sobic006G128900 Sobic004G057400--Sobic007G011400 Sobic004G031700 Sobic004G031700 Sobic004G057400--Sobic004G031700 Sobic004G057400--Sobic007G205800 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic009G022200 Sobic009G022200 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic001G478300 Sobic001G478300 Sobic006G209500--Sobic001G478300 Sobic006G209500--Sobic004G271900 Sobic006G088100 Sobic006G088100 Sobic006G209500--Sobic006G088100 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic006G209500--Sobic007G205800 Sobic004G256600--Sobic003G258400 Sobic004G256600--Sobic004G271900 Sobic004G256600--Sobic010G263800 Sobic009G040700 Sobic009G040700 Sobic004G256600--Sobic009G040700 Sobic005G187200 Sobic005G187200 Sobic004G256600--Sobic005G187200 Sobic004G256600--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic004G256600--Sobic009G231300 Sobic004G256600--Sobic009G117400 Sobic004G256600--Sobic002G077200 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200
Octagon: transcription factors


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