Gene annotation
Transcriptome id Sobic.002G270300.1
Synonym BB, Sb02g030410, BB2
Functional annotation zinc RING finger protein, putative, expressed
UniProt C5X634
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF150
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K19045; E3 ubiquitin-protein ligase BIG BROTHER and related proteins
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G63530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g35690.1 : zinc RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a047720
Brachypodium KQJ91123 , KQJ91122
Barley HORVU5Hr1G080540.4 , HORVU5Hr1G080540.5 , HORVU5Hr1G080540.2 , HORVU5Hr1G080540.3 , HORVU5Hr1G080540.1
Wheat TraesCS5B02G313800
Populus -


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cDNA sequences
Sobic.002G270300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
2 Sobic.009G117400 protein kinase domain containing protein, expressed -
3 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
4 Sobic.004G271900 RMD5 homolog A, putative, expressed -
5 Sobic.009G225200 expressed protein -
6 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
7 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
8 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
9 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
10 Sobic.006G194150 - -
11 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
12 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
13 Sobic.003G258400 splicing factor-related, putative, expressed -
14 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
15 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
16 Sobic.001G347600 paramyosin, putative, expressed -
17 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
18 Sobic.003G093600 methyltransferase, putative, expressed -
19 Sobic.003G416100 flowering promoting factor-like 1, putative, expressed -
20 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -


Gene co-expression network
sample Sobic002G270300 Sobic002G270300 Sobic008G126200 Sobic008G126200 Sobic002G270300--Sobic008G126200 Sobic009G117400 Sobic009G117400 Sobic002G270300--Sobic009G117400 Sobic009G117300 Sobic009G117300 Sobic002G270300--Sobic009G117300 Sobic004G271900 Sobic004G271900 Sobic002G270300--Sobic004G271900 Sobic009G225200 Sobic009G225200 Sobic002G270300--Sobic009G225200 Sobic006G209500 Sobic006G209500 Sobic002G270300--Sobic006G209500 Sobic008G136000 Sobic008G136000 Sobic002G270300--Sobic008G136000 Sobic006G088100 Sobic006G088100 Sobic002G270300--Sobic006G088100 Sobic001G428400 Sobic001G428400 Sobic002G270300--Sobic001G428400 Sobic006G184300 Sobic006G184300 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic008G126200--Sobic002G270300 Sobic007G023700 Sobic007G023700 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic001G347600 Sobic001G347600 Sobic008G126200--Sobic001G347600 Sobic005G012000 Sobic005G012000 Sobic008G126200--Sobic005G012000 Sobic003G093600 Sobic003G093600 Sobic008G126200--Sobic003G093600 Sobic002G108800 Sobic002G108800 Sobic008G126200--Sobic002G108800 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic009G117400--Sobic010G263800 Sobic007G205800 Sobic007G205800 Sobic009G117400--Sobic007G205800 Sobic004G256600 Sobic004G256600 Sobic009G117400--Sobic004G256600 Sobic008G034600 Sobic008G034600 Sobic009G117400--Sobic008G034600 Sobic009G117400--Sobic001G347600 Sobic004G057400 Sobic004G057400 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic009G117300--Sobic009G117400 Sobic009G117300--Sobic004G271900 Sobic009G117300--Sobic009G225200 Sobic009G117300--Sobic010G263800 Sobic009G117300--Sobic004G057400 Sobic009G117300--Sobic008G034600 Sobic009G117300--Sobic006G209500 Sobic009G117300--Sobic004G256600 Sobic009G117300--Sobic007G205800 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic004G271900--Sobic003G093600 Sobic004G271900--Sobic004G256600 Sobic007G011400 Sobic007G011400 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic004G271900--Sobic009G117300 Sobic009G225200--Sobic009G117300 Sobic009G225200--Sobic009G117400 Sobic005G015100 Sobic005G015100 Sobic009G225200--Sobic005G015100 Sobic001G043900 Sobic001G043900 Sobic009G225200--Sobic001G043900 Sobic003G258900 Sobic003G258900 Sobic009G225200--Sobic003G258900 Sobic009G225200--Sobic004G271900 Sobic004G348100 Sobic004G348100 Sobic009G225200--Sobic004G348100 Sobic003G442000 Sobic003G442000 Sobic009G225200--Sobic003G442000 Sobic009G015800 Sobic009G015800 Sobic009G225200--Sobic009G015800 Sobic001G478300 Sobic001G478300 Sobic006G209500--Sobic001G478300 Sobic006G209500--Sobic004G271900 Sobic006G209500--Sobic006G088100 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic006G209500--Sobic007G205800 Sobic008G136000--Sobic001G428400 Sobic008G136000--Sobic002G270300 Sobic003G024800 Sobic003G024800 Sobic008G136000--Sobic003G024800 Sobic003G328800 Sobic003G328800 Sobic008G136000--Sobic003G328800 Sobic004G349100 Sobic004G349100 Sobic008G136000--Sobic004G349100 Sobic004G077000 Sobic004G077000 Sobic008G136000--Sobic004G077000 Sobic001G512600 Sobic001G512600 Sobic008G136000--Sobic001G512600 Sobic001G420700 Sobic001G420700 Sobic008G136000--Sobic001G420700 Sobic010G163900 Sobic010G163900 Sobic008G136000--Sobic010G163900 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic001G428400--Sobic004G077000 Sobic001G428400--Sobic009G117300 Sobic004G211400 Sobic004G211400 Sobic001G428400--Sobic004G211400 Sobic001G039700 Sobic001G039700 Sobic001G428400--Sobic001G039700 Sobic004G006300 Sobic004G006300 Sobic001G428400--Sobic004G006300 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic001G428400--Sobic009G117400 Sobic001G428400--Sobic008G136000
Octagon: transcription factors


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