Gene annotation
Transcriptome id Sobic.006G194150.4,Sobic.006G194150.2,Sobic.006G194150.1,Sobic.006G194150.6,Sobic.006G194150.3,Sobic.006G194150.5
Synonym -
Functional annotation -
UniProt A0A1Z5RF66 , A0A1Z5RET9 , A0A1Z5RFK2
Pfam -
Panther DB PTHR11647:SF59 PTHR11647 PTHR11647 PTHR11647:SF59
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004151; dihydroorotase activity GO:0004151dihydroorotase activity


Orthologs (automatic annotation)
TAIR AT4G22930 : pyrimidin 4
RAP-DB (Rice) LOC_Os01g54370.1 : dihydropyrimidinase, putative, expressed
MaizeGDB (Corn) Zm00025a027558
Brachypodium -
Barley HORVU3Hr1G071270.3 , HORVU3Hr1G071270.1
Wheat TraesCS3B02G307600 , TraesCS3A02G273900
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.006G194300 DUF581 domain containing protein, expressed -
5 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
6 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
7 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
8 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
9 Sobic.003G397300 - -
10 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
11 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.005G003200 sugar-responsive gene(PubMedID : 25496467)@asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
13 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
14 Sobic.007G189800 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
15 Sobic.001G028800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
17 Sobic.002G270300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
18 Sobic.001G082300 cytochrome P450, putative, expressed -
19 Sobic.004G161301 - -
20 Sobic.001G363100 universal stress protein domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G194150 Sobic006G194150 Sobic001G032100 Sobic001G032100 Sobic006G194150--Sobic001G032100 Sobic005G012000 Sobic005G012000 Sobic006G194150--Sobic005G012000 Sobic005G085600 Sobic005G085600 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic003G296600 Sobic003G296600 Sobic006G194150--Sobic003G296600 Sobic006G184300 Sobic006G184300 Sobic006G194150--Sobic006G184300 Sobic003G293900 Sobic003G293900 Sobic006G194150--Sobic003G293900 Sobic008G126200 Sobic008G126200 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic001G032100--Sobic003G296600 Sobic001G032100--Sobic005G085600 Sobic001G247400 Sobic001G247400 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic004G221900 Sobic004G221900 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic001G032100--Sobic003G293900 Sobic001G225100 Sobic001G225100 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic003G044900 Sobic003G044900 Sobic005G012000--Sobic003G044900 Sobic002G039500 Sobic002G039500 Sobic005G012000--Sobic002G039500 Sobic005G012000--Sobic006G184300 Sobic007G023700 Sobic007G023700 Sobic005G012000--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic005G012000--Sobic003G093600 Sobic005G012000--Sobic008G126200 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic007G073400 Sobic007G073400 Sobic005G012000--Sobic007G073400 Sobic005G085200 Sobic005G085200 Sobic005G085600--Sobic005G085200 Sobic007G189800 Sobic007G189800 Sobic005G085600--Sobic007G189800 Sobic005G085600--Sobic001G032100 Sobic009G180200 Sobic009G180200 Sobic005G085600--Sobic009G180200 Sobic001G363100 Sobic001G363100 Sobic005G085600--Sobic001G363100 Sobic009G159700 Sobic009G159700 Sobic005G085600--Sobic009G159700 Sobic004G199600 Sobic004G199600 Sobic005G085600--Sobic004G199600 Sobic009G078500 Sobic009G078500 Sobic005G085600--Sobic009G078500 Sobic010G057300 Sobic010G057300 Sobic005G085600--Sobic010G057300 Sobic006G194300--Sobic006G194150 Sobic006G194300--Sobic008G126200 Sobic002G324200 Sobic002G324200 Sobic006G194300--Sobic002G324200 Sobic001G028800 Sobic001G028800 Sobic006G194300--Sobic001G028800 Sobic006G194300--Sobic009G183500 Sobic009G178600 Sobic009G178600 Sobic006G194300--Sobic009G178600 Sobic006G194300--Sobic006G184300 Sobic003G305400 Sobic003G305400 Sobic006G194300--Sobic003G305400 Sobic010G042900 Sobic010G042900 Sobic006G194300--Sobic010G042900 Sobic003G296600--Sobic001G032100 Sobic003G296600--Sobic003G293900 Sobic003G296600--Sobic001G247400 Sobic003G296600--Sobic004G221900 Sobic003G296600--Sobic001G225100 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic003G296600--Sobic006G184300 Sobic002G108800 Sobic002G108800 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic007G156500 Sobic007G156500 Sobic006G184300--Sobic007G156500 Sobic006G184300--Sobic002G039500 Sobic006G184300--Sobic008G126200 Sobic006G184300--Sobic004G221900 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic001G347600 Sobic001G347600 Sobic008G126200--Sobic001G347600 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic008G126200--Sobic002G108800 Sobic006G213100 Sobic006G213100 Sobic003G397300--Sobic006G213100 Sobic003G397300--Sobic006G194150 Sobic003G328800 Sobic003G328800 Sobic003G397300--Sobic003G328800 Sobic009G214600 Sobic009G214600 Sobic003G397300--Sobic009G214600 Sobic002G279100 Sobic002G279100 Sobic003G397300--Sobic002G279100 Sobic003G397300--Sobic007G189800 Sobic009G064766 Sobic009G064766 Sobic003G397300--Sobic009G064766 Sobic001G194000 Sobic001G194000 Sobic003G397300--Sobic001G194000 Sobic003G397300--Sobic005G085600
Octagon: transcription factors


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